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AY682195.1__AAV35944.1__orf124__00124

Bact-Vir

AY682195.1__AAV35944.1__orf124__00124

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

55.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Salchichonvirus› Lactobacillus_phage_LP65

TaxID: 2892344

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-162
PDB
Domain cluster: rep: NC_048085.1__YP_009814552.1__HOU40_gp165__00165__D78-194
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.68 40.0 4.53e-01 89.4% 75.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 24.0 3.38e-01 82.1% 65.0%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 31.0 3.51e-01 85.4% 56.4%
1v4pC01 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.63 45.0 4.74e-01 91.1% 83.3%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 39.0 3.84e-01 86.2% 61.2%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 4.20e-01 91.9% 91.1%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.56 42.0 4.37e-01 78.0% 96.5%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.56 48.0 4.71e-01 96.7% 97.8%
1x5mA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 4.01e-01 91.1% 81.1%
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.54 42.0 3.83e-01 82.9% 75.9%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.53 41.0 3.85e-01 81.3% 88.6%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 41.0 3.46e-01 85.4% 85.6%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 37.0 3.97e-01 87.0% 88.2%
3khnB00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.51 39.0 3.65e-01 82.9% 84.1%
4je5C00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 36.0 2.42e-01 83.7% 18.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968594 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 33.0 4.07e-01 86.2% 84.0%
3860241 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.61 43.0 2.77e-01 74.0% 66.5%
3246054 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 43.0 3.01e-01 100.0% 22.0%
2439583 3081.1.1.0 ↗ a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 0.59 32.0 3.38e-01 87.8% 56.4%
5052852 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 51.0 4.51e-01 96.7% 92.4%
3508830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 33.0 3.32e-01 82.1% 56.2%
4145049 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.55 43.0 4.37e-01 84.6% 88.8%
5013284 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 31.0 3.72e-01 87.8% 88.0%
4958319 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 49.0 4.46e-01 96.7% 95.6%
3391336 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.54 42.0 3.44e-01 82.1% 84.3%
3959629 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 39.0 4.14e-01 87.8% 85.7%
4999368 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 48.0 4.32e-01 97.6% 97.7%
4971706 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 48.0 4.22e-01 100.0% 84.3%
999250 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.54 42.0 3.73e-01 82.9% 76.4%
4974485 873.1.1.22 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.54 48.0 4.09e-01 95.9% 93.8%
4983622 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 47.0 4.23e-01 94.3% 97.6%
4954550 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.53 39.0 4.03e-01 87.0% 82.6%
5023704 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 47.0 4.52e-01 98.4% 89.0%
3607300 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 22.0 3.11e-01 87.8% 80.0%
3957801 304.103.1.0 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like 0.53 35.0 3.00e-01 93.5% 38.1%
4008652 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.53 41.0 3.69e-01 83.7% 77.1%
4971398 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 34.0 3.56e-01 87.0% 72.7%
3226511 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.52 45.0 3.77e-01 100.0% 94.4%
5071258 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 45.0 3.81e-01 97.6% 90.2%
4537543 3103.1.1.4 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 0.51 36.0 3.65e-01 73.2% 99.2%
3377563 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.51 42.0 3.88e-01 89.4% 98.1%
3724051 6044.1.1.0 ↗ a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like 0.51 38.0 4.09e-01 97.6% 93.3%
5030026 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 31.0 3.51e-01 87.0% 82.2%
5063340 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 44.0 4.18e-01 94.3% 93.8%
5078655 873.1.1.15 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27323 0.51 45.0 4.29e-01 97.6% 96.6%
3940439 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 41.0 3.03e-01 89.4% 68.3%
3603433 242.4.1.2 ↗ a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.50 31.0 3.22e-01 95.9% 63.3%