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AY682195.1__AAV35946.1__orf126__00126

Bact-Vir

AY682195.1__AAV35946.1__orf126__00126

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-123
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 32.6 1.10e-07 53.0% 95.9%
PF13392.13 HNH_3 64.2 9.00e-18 38.5% 93.5%
D2 high residues 129-187
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.69e-01 78.0% 69.9%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 54.0 4.40e-01 89.8% 97.5%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.17e-01 78.0% 53.0%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 58.0 4.50e-01 94.9% 96.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 47.0 4.25e-01 72.9% 68.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.58e-01 81.4% 75.0%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 46.0 4.39e-01 72.9% 78.6%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.87e-01 72.9% 92.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.90e-01 72.9% 92.2%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.33e-01 78.0% 65.0%
3b8xA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 56.0 4.50e-01 100.0% 97.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.62e-01 86.4% 80.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.93e-01 72.9% 100.0%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.22e-01 83.1% 60.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 44.0 4.48e-01 72.9% 91.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 44.0 4.28e-01 72.9% 85.1%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 52.0 4.46e-01 93.2% 92.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.49e-01 72.9% 93.3%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 51.0 4.41e-01 94.9% 79.2%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 52.0 4.36e-01 100.0% 69.9%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.27e-01 72.9% 87.1%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.46e-01 83.1% 74.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.79e-01 79.7% 87.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 43.0 4.49e-01 72.9% 83.3%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 52.0 4.46e-01 100.0% 77.9%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 3.74e-01 79.7% 60.2%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 52.0 4.21e-01 100.0% 67.5%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.30e-01 93.2% 78.6%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.61 46.0 3.67e-01 81.4% 75.2%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.23e-01 76.3% 46.4%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.25e-01 76.3% 42.7%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.27e-01 71.2% 96.4%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 51.0 4.34e-01 100.0% 78.5%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 50.0 4.07e-01 100.0% 67.2%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 48.0 4.26e-01 93.2% 80.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.21e-01 72.9% 93.1%
3dxqB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.60 51.0 3.43e-01 93.2% 64.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.76e-01 89.8% 88.9%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 48.0 4.24e-01 93.2% 85.7%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.59 47.0 4.19e-01 98.3% 68.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 50.0 4.17e-01 100.0% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 4.16e-01 76.3% 90.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.67e-01 83.1% 98.1%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 49.0 4.11e-01 100.0% 63.0%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 46.0 3.99e-01 93.2% 81.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.44e-01 79.7% 92.2%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.18e-01 78.0% 96.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 38.0 3.88e-01 86.4% 73.7%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 46.0 4.07e-01 100.0% 82.7%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 42.0 2.75e-01 88.1% 27.6%
3caiA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 46.0 3.69e-01 100.0% 72.7%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 46.0 3.96e-01 98.3% 71.2%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 43.0 4.18e-01 89.8% 88.6%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.88e-01 84.7% 74.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 40.0 4.25e-01 78.0% 96.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 3.97e-01 96.6% 94.8%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.39e-01 79.7% 83.0%
2qg7B02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 44.0 2.94e-01 100.0% 64.9%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.06e-01 84.7% 80.2%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 40.0 2.84e-01 98.3% 57.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 51.0 4.38e-01 78.0% 58.9%
3230520 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 51.0 4.45e-01 79.7% 60.0%
3663761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.05e-01 76.3% 48.6%
3877938 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 50.0 4.32e-01 78.0% 58.9%
4171510 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 47.0 4.23e-01 72.9% 68.8%
3883165 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 49.0 4.11e-01 78.0% 53.0%
3633434 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 47.0 4.45e-01 72.9% 78.6%
3902975 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 48.0 4.85e-01 78.0% 100.0%
3936496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.17e-01 81.4% 56.0%
3881123 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.32e-01 79.7% 60.0%
4269256 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.65 52.0 5.26e-01 88.1% 91.7%
5064174 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 53.0 4.64e-01 93.2% 81.9%
3403344 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 44.0 4.45e-01 72.9% 70.0%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 49.0 3.81e-01 83.1% 41.5%
4003123 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 45.0 4.38e-01 72.9% 84.6%
3826746 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.52e-01 84.7% 67.5%
4982334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.83e-01 84.7% 85.5%
5080553 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 51.0 4.42e-01 94.9% 80.6%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 45.0 4.05e-01 78.0% 64.7%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 3.97e-01 78.0% 70.0%
4130309 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 50.0 4.57e-01 94.9% 92.9%
4423084 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.62 50.0 3.66e-01 91.5% 72.9%
3388135 4292.2.1.1 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.62 49.0 4.64e-01 93.2% 89.3%
3976043 209.1.1.6 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › InvE_AD 0.61 45.0 3.49e-01 81.4% 55.6%
4268529 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 50.0 4.54e-01 100.0% 91.8%
4639808 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.59 48.0 4.30e-01 94.9% 90.0%
4094714 4292.2.1.1 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.59 48.0 4.45e-01 100.0% 80.0%
4062573 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 47.0 4.06e-01 93.2% 77.0%
4102050 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.58 43.0 3.56e-01 81.4% 62.7%
4240279 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 47.0 3.89e-01 94.9% 67.8%
3789263 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.57 45.0 2.93e-01 89.8% 30.7%
3592754 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.60e-01 89.8% 69.7%
3583235 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.56 41.0 2.64e-01 81.4% 23.6%
3175902 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 4.10e-01 83.1% 85.0%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 4.12e-01 81.4% 96.4%
3524696 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.52 44.0 3.27e-01 100.0% 65.3%
3635318 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.52 39.0 3.06e-01 81.4% 51.1%
3789276 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.51 37.0 3.07e-01 78.0% 93.6%
1088703 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.50 40.0 2.84e-01 98.3% 57.2%
D3 high residues 207-254
PDB
D4 high residues 273-328
PDB
D5 high residues 331-390
PDB