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AY682195.1__AAV35950.1__orf130__00130

Bact-Vir

AY682195.1__AAV35950.1__orf130__00130

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

62.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Salchichonvirus› Lactobacillus_phage_LP65

TaxID: 2892344

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-65
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23980.2 best Phage_tail_tube_init 50.6 3.20e-13 100.0% 19.8%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 38.0 3.85e-01 82.7% 53.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 3.85e-01 84.6% 53.6%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 47.0 3.55e-01 86.5% 39.5%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.56 42.0 3.90e-01 84.6% 69.1%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.34e-01 84.6% 94.3%
4c97A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.01e-01 84.6% 47.8%
6njyA01 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.12e-01 86.5% 54.5%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 39.0 3.44e-01 92.3% 60.6%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.30e-01 78.8% 15.6%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 2.75e-01 82.7% 68.3%
1n7vA03 2.70.250.10 Mainly Beta › Distorted Sandwich › receptor-binding protein prd1-p2, domain 3 › receptor-binding protein prd1-p2, domain 3 0.50 37.0 2.57e-01 86.5% 82.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165637 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.68 46.0 3.55e-01 71.2% 80.0%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 3.73e-01 84.6% 55.6%
4940521 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.59 41.0 4.23e-01 92.3% 80.0%
3881484 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 45.0 3.38e-01 92.3% 77.9%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 3.64e-01 100.0% 92.6%
3731333 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.55 43.0 3.32e-01 92.3% 95.7%
3490755 375.1.1.202 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.55 27.0 3.06e-01 75.0% 47.5%
4065107 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.55 39.0 2.21e-01 75.0% 85.5%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 33.0 3.30e-01 84.6% 52.7%
3626865 2.1.1.49 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 0.54 40.0 3.19e-01 88.5% 58.5%
3427825 2484.1.1.45 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.52 42.0 3.15e-01 92.3% 64.3%
2512866 304.51.1.7 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.52 39.0 3.13e-01 86.5% 54.9%
5028424 239.1.1.2 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e 0.52 39.0 2.97e-01 86.5% 51.7%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.01e-01 100.0% 86.0%
3250266 207.1.1.129 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_ComC 0.52 34.0 2.04e-01 71.2% 13.1%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 39.0 3.74e-01 100.0% 71.7%
3685970 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 38.0 2.72e-01 82.7% 34.1%
4022796 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 35.0 2.70e-01 75.0% 90.8%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.43e-01 82.7% 65.0%
3498059 5.1.5.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WDR93 0.51 42.0 2.50e-01 98.1% 29.5%
5048593 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 35.0 2.60e-01 76.9% 80.5%