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AY682195.1__AAV35983.1__orf163__00163

Bact-Vir

AY682195.1__AAV35983.1__orf163__00163

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Salchichonvirus› Lactobacillus_phage_LP65

TaxID: 2892344

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ti6B02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 3.68e-01 73.3% 40.4%
4bgdA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 44.0 2.70e-01 80.0% 90.6%
1m5q102 3.30.310.60 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain 0.62 46.0 3.84e-01 86.7% 48.3%
1n0uA03 3.90.1430.10 Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) 0.61 45.0 3.19e-01 83.3% 31.8%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.59 43.0 4.03e-01 96.7% 62.5%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 43.0 2.66e-01 100.0% 11.7%
1gkuB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 42.0 2.65e-01 93.3% 13.6%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.50e-01 86.7% 43.8%
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 2.51e-01 83.3% 93.4%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 41.0 2.56e-01 73.3% 23.3%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.56 47.0 3.28e-01 96.7% 64.9%
3nnqA00 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.56 41.0 3.08e-01 86.7% 27.4%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 2.73e-01 73.3% 30.8%
2cnqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 43.0 2.88e-01 90.0% 42.0%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 2.79e-01 80.0% 42.0%
1fxrA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.36e-01 86.7% 39.1%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 38.0 2.35e-01 96.7% 35.0%
1tzfA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 39.0 2.34e-01 70.0% 10.4%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 39.0 2.48e-01 76.7% 37.8%
3if4A01 2.20.20.40 Mainly Beta › Single Sheet › Anthopleurin-A › Integron cassette protein 0.54 43.0 3.78e-01 96.7% 100.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 39.0 2.92e-01 83.3% 40.4%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.40e-01 73.3% 28.8%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 36.0 2.45e-01 96.7% 75.6%
4oj5B01 3.30.2020.50 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 38.0 3.11e-01 90.0% 54.9%
1z1yA01 2.90.20.10 Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain 0.52 40.0 2.65e-01 96.7% 95.3%
3jckC00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 38.0 2.23e-01 93.3% 8.2%
4narA02 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.51 32.0 2.33e-01 93.3% 18.3%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 2.74e-01 96.7% 31.9%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.51 39.0 2.62e-01 96.7% 45.0%
1pyiA01 4.10.240.10 Few Secondary Structures › Irregular › CD2-Gal4 › Zn(2)-C6 fungal-type DNA-binding domain 0.50 36.0 3.00e-01 76.7% 67.7%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.05e-01 96.7% 47.9%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 34.0 2.32e-01 80.0% 35.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3885493 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.63 47.0 4.00e-01 70.0% 42.0%
3619906 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.61 45.0 2.91e-01 100.0% 17.4%
4995715 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 2.87e-01 96.7% 54.1%
3995941 148.1.3.33 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYNC2H1_AAA_dom 0.60 44.0 3.10e-01 93.3% 80.0%
3871379 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.60 46.0 2.91e-01 83.3% 18.8%
3720602 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.59 48.0 3.67e-01 96.7% 41.2%
3293898 3958.1.1.2 ↗ extended segments › Cell division factor MciZ › Cell division factor MciZ › Cell division factor MciZ › Myb_DNA-bind_3 0.59 46.0 4.19e-01 96.7% 68.9%
3690414 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.59 46.0 2.98e-01 100.0% 18.9%
3315837 148.1.3.276 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Myb_DNA-bind_3 0.59 46.0 3.65e-01 96.7% 44.3%
3495366 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.58 41.0 3.89e-01 83.3% 57.5%
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.58 43.0 3.22e-01 86.7% 29.4%
3207076 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.58 46.0 3.87e-01 93.3% 96.7%
3597541 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 44.0 2.58e-01 76.7% 8.3%
3395104 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.57 40.0 2.76e-01 83.3% 45.7%
3597486 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.57e-01 96.7% 45.7%
4955517 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 46.0 3.26e-01 96.7% 26.4%
4028213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 2.97e-01 96.7% 25.2%
3349782 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 43.0 3.08e-01 86.7% 42.9%
3382295 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 42.0 3.01e-01 93.3% 80.9%
3510925 109.4.1.147 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind 0.56 47.0 2.62e-01 100.0% 14.3%
3695186 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.56 41.0 3.23e-01 90.0% 73.8%
3275721 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.56 42.0 3.19e-01 96.7% 29.0%
3723431 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 39.0 2.51e-01 73.3% 12.9%
3406180 501.1.1.0 ↗ few secondary structure elements › Heparin-binding domain from vascular endothelial growth factor › Heparin-binding domain from vascular endothelial growth factor › Heparin-binding domain from vascular endothelial growth factor 0.55 44.0 3.57e-01 90.0% 43.8%
3517171 604.8.1.3 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 0.54 39.0 2.51e-01 90.0% 15.2%
3262224 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.54 41.0 3.32e-01 93.3% 44.3%
2542985 5069.1.1.3 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.54 38.0 2.47e-01 70.0% 13.1%
3733460 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.53 36.0 2.27e-01 100.0% 20.7%
4801459 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.53 39.0 3.16e-01 96.7% 98.7%
4854387 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 38.0 2.38e-01 73.3% 12.1%
3635898 4120.1.1.66 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF26200 0.52 38.0 2.90e-01 96.7% 31.6%
2722755 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.52 36.0 2.66e-01 96.7% 26.0%
4681338 375.1.1.285 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CpXC 0.52 39.0 3.33e-01 73.3% 38.3%
5079119 604.39.1.6 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT 0.52 33.0 2.19e-01 90.0% 13.5%
4550724 603.1.1.104 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.52 39.0 2.24e-01 83.3% 7.7%
4625008 3433.1.1.4 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › NA37 0.52 37.0 3.66e-01 73.3% 68.6%
3793008 12.3.1.26 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N 0.51 43.0 2.55e-01 90.0% 64.6%
3585020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.44e-01 80.0% 40.0%
3981126 4125.1.1.4 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › NA37 0.51 37.0 3.64e-01 70.0% 65.7%
3577491 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 36.0 2.72e-01 93.3% 29.5%
3382992 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.51 38.0 3.82e-01 73.3% 78.6%
3203359 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 39.0 3.69e-01 73.3% 53.8%