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AY855346.1__AAZ32270.1__X__00023

Bact-Vir

AY855346.1__AAZ32270.1__X__00023

Identity

Accession:
AY855346 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lubbockvirus› Clostridium_phage_phi_CD119

TaxID: 2883936

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-105
PDB
Domain cluster: rep: IMGVR_UViG_2728369326_000001-2728369326-2730033527__D111-184
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24032.2 best YQBQ 47.3 2.70e-12 98.8% 26.9%
D2 medium residues 109-128_185-219
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 70.0 4.91e-01 100.0% 35.4%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 49.0 3.35e-01 98.2% 26.6%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 37.0 3.25e-01 98.2% 45.3%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 38.0 3.06e-01 74.5% 76.5%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.54 42.0 3.77e-01 92.7% 58.8%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 39.0 3.32e-01 81.8% 61.8%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.08e-01 78.2% 91.2%
6l1kA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.05e-01 92.7% 53.3%
4g0bA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 42.0 2.87e-01 100.0% 24.5%
2kw7A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 43.0 3.17e-01 100.0% 34.4%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.51 36.0 2.83e-01 98.2% 30.8%
6zbsA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 39.0 2.76e-01 100.0% 24.3%
1a10I00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.50 33.0 3.28e-01 100.0% 61.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 70.0 5.87e-01 100.0% 61.1%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.78 71.0 6.21e-01 100.0% 70.0%
3981227 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 68.0 6.12e-01 100.0% 70.7%
3590379 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 69.0 5.86e-01 100.0% 74.4%
5058894 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.36e-01 76.4% 91.1%
4996262 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.58 46.0 3.79e-01 92.7% 46.7%
4990427 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.58 45.0 3.75e-01 92.7% 46.6%
4959999 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.32e-01 76.4% 95.6%
5058688 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.27e-01 74.5% 95.6%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 3.74e-01 72.7% 82.0%
5035333 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.52 38.0 3.29e-01 98.2% 46.0%
5049603 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.52 38.0 3.31e-01 89.1% 64.8%
D3 medium residues 131-180
PDB
Domain cluster: rep: NC_048665.1__YP_009833534.1__HWB20_gp15__00015__D145-189