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AY954948.1__AAX90641.1__X__00018
Bact-VirAY954948.1__AAX90641.1__X__00018
Identity
- Accession:
- AY954948 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 84-168
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pfiA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 5.59e-01 | 97.6% | 100.0% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 58.0 | 5.46e-01 | 98.8% | 81.6% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 5.26e-01 | 97.6% | 77.1% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 56.0 | 5.11e-01 | 96.5% | 73.9% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.91e-01 | 82.4% | 85.7% |
| 2bv6A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 55.0 | 4.79e-01 | 100.0% | 62.5% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.90e-01 | 88.2% | 91.0% |
| 7ewfA01 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 51.0 | 3.74e-01 | 96.5% | 33.2% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 51.0 | 4.26e-01 | 100.0% | 53.3% |
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.85e-01 | 96.5% | 93.5% |
| 2ly1A01 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.60 | 48.0 | 4.96e-01 | 87.1% | 94.9% |
| 5a48B00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.60 | 46.0 | 4.50e-01 | 91.8% | 75.0% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 52.0 | 4.91e-01 | 98.8% | 80.0% |
| 3frhA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 38.0 | 2.96e-01 | 83.5% | 30.6% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 50.0 | 4.99e-01 | 98.8% | 93.3% |
| 3grzB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 39.0 | 3.00e-01 | 81.2% | 30.6% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.60e-01 | 96.5% | 84.3% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.70e-01 | 98.8% | 87.9% |
| 2qbyA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 48.0 | 4.75e-01 | 96.5% | 96.7% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.21e-01 | 94.1% | 70.8% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 36.0 | 3.75e-01 | 87.1% | 70.9% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.45e-01 | 92.9% | 87.4% |
| 7vkkB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 2.93e-01 | 90.6% | 28.1% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 43.0 | 4.24e-01 | 98.8% | 81.7% |
| 2cpqA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 34.0 | 3.79e-01 | 78.8% | 85.9% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.19e-01 | 96.5% | 77.7% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.53 | 40.0 | 4.03e-01 | 85.9% | 79.3% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.53 | 46.0 | 3.25e-01 | 100.0% | 57.0% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 3.26e-01 | 85.9% | 50.5% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 45.0 | 4.26e-01 | 98.8% | 81.6% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 44.0 | 3.52e-01 | 100.0% | 85.3% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 38.0 | 3.96e-01 | 91.8% | 89.7% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.51 | 35.0 | 3.45e-01 | 85.9% | 66.0% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988732 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 56.0 | 5.19e-01 | 96.5% | 73.1% |
| 5046134 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 58.0 | 4.89e-01 | 100.0% | 58.6% |
| 3587554 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.65 | 55.0 | 5.22e-01 | 98.8% | 80.0% |
| 5071263 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 57.0 | 5.61e-01 | 100.0% | 95.6% |
| 3773056 | 101.1.2.512 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25877 | 0.64 | 48.0 | 5.21e-01 | 84.7% | 97.1% |
| 4983310 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.64 | 55.0 | 5.29e-01 | 100.0% | 83.0% |
| 4638470 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.64 | 57.0 | 4.57e-01 | 100.0% | 56.5% |
| 3786023 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.64 | 52.0 | 3.76e-01 | 96.5% | 31.2% |
| 5056115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 53.0 | 5.15e-01 | 91.8% | 90.5% |
| 5036586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 56.0 | 5.60e-01 | 98.8% | 97.6% |
| 4997255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 56.0 | 5.37e-01 | 100.0% | 92.0% |
| 5077319 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.63 | 53.0 | 4.12e-01 | 100.0% | 42.1% |
| 3566131 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.63 | 55.0 | 4.03e-01 | 100.0% | 37.5% |
| 3249715 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.62 | 53.0 | 4.75e-01 | 96.5% | 80.8% |
| 4966215 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 55.0 | 4.42e-01 | 98.8% | 50.3% |
| 3724304 | 101.1.2.519 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7791 | 0.62 | 53.0 | 5.04e-01 | 94.1% | 95.0% |
| 3587894 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.62 | 53.0 | 4.19e-01 | 95.3% | 46.9% |
| 3285723 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 54.0 | 4.30e-01 | 98.8% | 50.3% |
| 4391985 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.61 | 49.0 | 4.42e-01 | 98.8% | 62.5% |
| 4994432 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.88e-01 | 97.6% | 77.1% |
| 3942501 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 53.0 | 5.21e-01 | 97.6% | 96.7% |
| 4593646 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 52.0 | 5.20e-01 | 100.0% | 92.2% |
| 5001098 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 52.0 | 5.15e-01 | 97.6% | 94.4% |
| 4940261 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.60 | 46.0 | 4.92e-01 | 84.7% | 100.0% |
| 5058268 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.60 | 51.0 | 4.62e-01 | 94.1% | 69.6% |
| 3601608 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 51.0 | 3.96e-01 | 98.8% | 53.2% |
| 4978855 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.60 | 52.0 | 4.70e-01 | 98.8% | 71.7% |
| 4958040 | 101.1.2.896 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2551 | 0.59 | 52.0 | 5.04e-01 | 100.0% | 92.6% |
| 3278037 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 52.0 | 4.03e-01 | 98.8% | 45.6% |
| 3281879 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 52.0 | 4.11e-01 | 98.8% | 49.4% |
| 3740624 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.59 | 50.0 | 4.48e-01 | 96.5% | 81.6% |
| 4982703 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.59 | 47.0 | 4.65e-01 | 94.1% | 82.2% |
| 4585912 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.59 | 49.0 | 3.26e-01 | 95.3% | 21.3% |
| 4959935 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.59 | 45.0 | 3.56e-01 | 94.1% | 38.4% |
| 3279209 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 51.0 | 4.10e-01 | 98.8% | 62.3% |
| 3286725 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 51.0 | 4.05e-01 | 100.0% | 48.6% |
| 141918 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.59 | 51.0 | 4.08e-01 | 98.8% | 48.8% |
| 3280466 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 51.0 | 3.96e-01 | 97.6% | 46.3% |
| 4425403 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.58 | 49.0 | 4.66e-01 | 100.0% | 78.6% |
| 3701433 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 49.0 | 4.48e-01 | 97.6% | 89.2% |
| 4655837 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.58 | 40.0 | 2.98e-01 | 82.4% | 29.3% |
| 5078667 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 46.0 | 4.14e-01 | 91.8% | 61.7% |
| 4971464 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 46.0 | 4.21e-01 | 97.6% | 65.2% |
| 4986893 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.58 | 38.0 | 4.00e-01 | 80.0% | 76.0% |
| 5023661 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.57 | 48.0 | 4.22e-01 | 94.1% | 66.7% |
| 4062692 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.57 | 39.0 | 4.12e-01 | 82.4% | 80.0% |
| 5058520 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 45.0 | 4.18e-01 | 95.3% | 67.3% |
| 4941856 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 45.0 | 4.16e-01 | 94.1% | 67.3% |
| 4958611 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.57 | 45.0 | 3.54e-01 | 92.9% | 40.0% |
| 5073129 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.57 | 38.0 | 4.01e-01 | 82.4% | 78.7% |
| 5056451 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.65e-01 | 98.8% | 91.0% |
| 4986906 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.56 | 37.0 | 3.99e-01 | 83.5% | 81.4% |
| 5022607 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 40.0 | 2.84e-01 | 84.7% | 24.8% |
| 4975759 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.56 | 49.0 | 3.83e-01 | 100.0% | 70.5% |
| 5077595 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.35e-01 | 95.3% | 72.7% |
| 5031481 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.55 | 44.0 | 4.10e-01 | 96.5% | 68.2% |
| 3283775 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.55 | 43.0 | 3.44e-01 | 92.9% | 40.6% |
| 3282515 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.55 | 48.0 | 3.89e-01 | 100.0% | 93.7% |
| 3445234 | 2.9.1.0 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like | 0.55 | 43.0 | 2.89e-01 | 90.6% | 19.5% |
| None | — | 0.55 | 37.0 | 2.87e-01 | 83.5% | 29.6% | |
| 4969546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 4.56e-01 | 96.5% | 98.8% |
| 4214618 | 2004.1.1.1018 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA-ATPase_like | 0.53 | 45.0 | 2.98e-01 | 98.8% | 21.6% |
| 219927 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 45.0 | 3.69e-01 | 100.0% | 90.4% |
| 3176995 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.52 | 40.0 | 4.03e-01 | 89.4% | 84.5% |
| 5046890 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.72e-01 | 94.1% | 63.6% |
| 3973443 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 40.0 | 2.99e-01 | 83.5% | 46.1% |
| 172962 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.50 | 40.0 | 3.85e-01 | 98.8% | 74.5% |
| 3585868 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.50 | 36.0 | 3.60e-01 | 81.2% | 76.5% |
D2
medium
residues 3-67