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AY954948.1__AAX90643.1__X__00003

Bact-Vir

AY954948.1__AAX90643.1__X__00003

Identity

Accession:
AY954948 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Staphylococcus_phage_PT1028

TaxID: 320831

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
Domain cluster: rep: NC_070727.1__YP_010648363.1__PP279_gp39__00039__D1-22_54-131
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 48.0 4.97e-01 99.1% 61.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 46.0 5.38e-01 87.3% 80.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 46.0 4.95e-01 96.4% 69.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 43.0 4.80e-01 88.2% 77.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.67 49.0 4.51e-01 100.0% 59.2%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 37.0 4.64e-01 93.6% 93.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.61 42.0 4.00e-01 95.5% 59.5%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.58 32.0 3.40e-01 71.8% 59.6%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 30.0 3.73e-01 96.4% 84.6%
3gn4A00 6.10.220.10 Special › Helix non-globular › Helical scaffold and wing domains of SecA › 0.55 29.0 2.79e-01 96.4% 42.6%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 41.0 4.04e-01 91.8% 73.3%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.54 43.0 3.82e-01 88.2% 82.5%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 44.0 3.91e-01 90.9% 88.8%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.53 47.0 4.52e-01 100.0% 89.1%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 47.0 3.74e-01 96.4% 62.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4304581 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.85 48.0 5.26e-01 98.2% 67.0%
3289947 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 49.0 5.72e-01 90.0% 85.0%
4372550 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 50.0 5.50e-01 86.4% 78.9%
4396640 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 51.0 4.94e-01 84.5% 61.7%
4034495 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 6.64e-01 100.0% 93.3%
4458444 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 51.0 5.50e-01 70.9% 93.7%
4214308 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.74 48.0 5.34e-01 95.5% 84.7%
4279016 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 50.0 5.84e-01 88.2% 95.0%
3968604 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 47.0 5.15e-01 90.0% 79.8%
3786128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 46.0 5.28e-01 90.9% 87.5%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 48.0 5.69e-01 99.1% 93.8%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.71 45.0 5.04e-01 86.4% 81.2%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 49.0 5.14e-01 97.3% 77.0%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 47.0 5.09e-01 100.0% 79.8%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 47.0 4.98e-01 100.0% 76.0%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 48.0 5.10e-01 84.5% 82.1%
3279339 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.69 47.0 3.93e-01 70.0% 48.6%
3967748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 48.0 5.44e-01 84.5% 94.1%
3945219 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 42.0 4.25e-01 85.5% 60.9%
3968864 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 45.0 5.48e-01 85.5% 100.0%
3578154 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 49.0 5.40e-01 84.5% 93.3%
4142399 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.64 40.0 4.38e-01 81.8% 76.7%
3977260 101.1.1.39 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.63 57.0 5.60e-01 100.0% 93.3%
3982095 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.62 42.0 4.39e-01 83.6% 76.5%
4577850 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.61 51.0 5.43e-01 100.0% 97.0%
3286340 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.60 40.0 4.29e-01 81.8% 79.6%
3973709 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.56 45.0 4.64e-01 100.0% 88.6%
3729994 3755.3.1.284 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Utp11 0.51 34.0 3.24e-01 100.0% 56.9%