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AY954950.1__AAX90734.1__X__00042

Bact-Vir

AY954950.1__AAX90734.1__X__00042

Identity

Accession:
AY954950 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_187

TaxID: 2908096

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-67
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jcvA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.68 48.0 3.54e-01 75.0% 91.4%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.67 55.0 4.94e-01 89.1% 97.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.54e-01 100.0% 72.3%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 43.0 4.53e-01 100.0% 76.3%
1wkrA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 45.0 3.39e-01 78.1% 65.9%
3qo6A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 52.0 4.53e-01 95.3% 96.1%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 53.0 4.73e-01 100.0% 91.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.83e-01 96.9% 100.0%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.61 30.0 3.13e-01 70.3% 48.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.18e-01 100.0% 71.9%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 35.0 3.30e-01 98.4% 45.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 42.0 4.49e-01 100.0% 87.0%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 47.0 3.71e-01 87.5% 79.3%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 50.0 4.73e-01 98.4% 100.0%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 42.0 4.25e-01 76.6% 95.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.01e-01 100.0% 75.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 37.0 3.61e-01 81.2% 59.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 39.0 4.02e-01 100.0% 76.7%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.51e-01 100.0% 91.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.43e-01 100.0% 79.2%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.56 48.0 3.87e-01 100.0% 96.3%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 3.71e-01 98.4% 54.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.54e-01 100.0% 98.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.34e-01 98.4% 80.6%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 4.15e-01 93.8% 95.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 4.29e-01 98.4% 91.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.23e-01 100.0% 83.1%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 43.0 4.14e-01 100.0% 73.7%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.87e-01 100.0% 64.3%
3pv2A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 43.0 3.96e-01 92.2% 92.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.10e-01 100.0% 79.4%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.40e-01 100.0% 92.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 42.0 4.40e-01 100.0% 98.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.46e-01 90.6% 85.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 38.0 3.23e-01 100.0% 44.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 42.0 4.28e-01 100.0% 89.1%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.24e-01 100.0% 96.5%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.24e-01 100.0% 96.5%
1je6A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.74e-01 87.5% 98.9%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.79e-01 100.0% 63.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.52 36.0 3.72e-01 100.0% 82.5%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.12e-01 100.0% 91.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 4.22e-01 100.0% 95.0%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 4.06e-01 100.0% 88.9%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.08e-01 85.9% 95.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 4.06e-01 100.0% 91.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.35e-01 100.0% 86.0%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.77e-01 100.0% 70.0%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.98e-01 96.9% 86.0%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 43.0 4.74e-01 100.0% 84.0%
3991244 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.65 42.0 4.76e-01 98.4% 93.3%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.30e-01 100.0% 62.7%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.89e-01 100.0% 92.0%
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.67e-01 98.4% 88.0%
4953675 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.63 52.0 3.92e-01 95.3% 61.8%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.75e-01 100.0% 85.0%
4425367 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.61 43.0 3.67e-01 76.6% 90.0%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.64e-01 98.4% 96.0%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.40e-01 100.0% 83.3%
5035447 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.33e-01 100.0% 78.5%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.56 46.0 4.69e-01 98.4% 100.0%
3567457 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 43.0 4.26e-01 100.0% 77.1%
3899829 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 42.0 4.07e-01 98.4% 70.7%
3516244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 42.0 3.96e-01 98.4% 66.3%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.48e-01 98.4% 98.2%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 4.04e-01 100.0% 70.7%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.55 42.0 3.13e-01 100.0% 31.2%
2834765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 42.0 4.19e-01 100.0% 78.3%
4104114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 4.22e-01 100.0% 81.5%
3217113 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 4.16e-01 96.9% 80.0%
3911321 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 3.97e-01 100.0% 67.5%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 42.0 4.22e-01 100.0% 83.1%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 4.26e-01 100.0% 88.3%
3748846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 43.0 4.28e-01 100.0% 84.6%
3964829 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.55 44.0 4.11e-01 95.3% 97.6%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 4.41e-01 100.0% 93.1%
3899851 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 4.17e-01 98.4% 81.5%
3755099 604.1.1.97 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.54 42.0 3.87e-01 100.0% 63.5%
3898363 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.06e-01 100.0% 77.1%
3243949 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 43.0 4.47e-01 98.4% 91.7%
3269758 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 42.0 3.92e-01 100.0% 67.5%
3543889 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 42.0 2.56e-01 100.0% 12.9%
3539147 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.06e-01 100.0% 77.1%
3906249 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 41.0 3.97e-01 100.0% 72.0%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 42.0 3.90e-01 100.0% 67.5%
3548244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.28e-01 100.0% 90.0%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.16e-01 100.0% 83.1%
4483819 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 41.0 4.03e-01 100.0% 77.1%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.54 36.0 3.76e-01 98.4% 75.0%
3920897 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 44.0 4.19e-01 100.0% 77.3%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 42.0 3.79e-01 100.0% 61.1%
3391702 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 3.87e-01 100.0% 67.5%
3526950 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 42.0 4.32e-01 100.0% 93.3%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 42.0 4.17e-01 100.0% 80.9%
162441 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 41.0 4.01e-01 100.0% 76.1%
3522718 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 43.0 4.49e-01 100.0% 96.7%
3876823 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 41.0 3.90e-01 100.0% 72.0%
3487686 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.77e-01 100.0% 64.7%
4091379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.73e-01 98.4% 71.4%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.10e-01 100.0% 84.6%
4119802 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 42.0 4.24e-01 100.0% 87.7%
3209967 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.52 46.0 3.34e-01 100.0% 59.5%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 40.0 3.98e-01 100.0% 78.6%
4632138 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 43.0 4.35e-01 100.0% 90.8%
4931670 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.52 36.0 2.44e-01 73.4% 18.0%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 4.39e-01 100.0% 92.3%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.97e-01 100.0% 84.6%
3522910 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 40.0 3.83e-01 100.0% 74.7%
None — 0.51 44.0 2.57e-01 100.0% 17.7%
3663356 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 44.0 2.52e-01 100.0% 15.8%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 42.0 4.21e-01 100.0% 92.3%
3769245 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 40.0 3.82e-01 100.0% 76.0%
3797970 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 40.0 3.61e-01 100.0% 63.3%
3866352 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.50 43.0 2.52e-01 100.0% 17.5%