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AY954955.1__AAX91167.1__X__00072

Bact-Vir

AY954955.1__AAX91167.1__X__00072

Identity

Accession:
AY954955 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_42E

TaxID: 2908113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-82
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.68 55.0 5.27e-01 100.0% 75.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.34e-01 100.0% 65.5%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.32e-01 92.8% 72.6%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.23e-01 97.1% 74.4%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.62e-01 92.8% 57.8%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.53 36.0 3.48e-01 94.2% 62.3%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.02e-01 92.8% 39.7%
2pvjA01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 2.79e-01 87.0% 82.2%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 3.31e-01 91.3% 92.3%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 44.0 3.13e-01 100.0% 37.1%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 39.0 2.90e-01 87.0% 89.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787973 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.68 55.0 4.21e-01 100.0% 40.0%
3735293 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.67 53.0 3.63e-01 100.0% 23.8%
3784677 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.66 49.0 3.50e-01 92.8% 25.5%
3319155 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.66 50.0 3.39e-01 100.0% 20.7%
4011359 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.64 45.0 3.61e-01 98.6% 36.4%
4458458 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.62 44.0 3.00e-01 97.1% 18.9%
4322135 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.62 41.0 4.14e-01 92.8% 68.6%
5073308 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.11e-01 100.0% 63.7%
3466475 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 49.0 4.06e-01 100.0% 48.5%
3328100 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 39.0 2.43e-01 87.0% 12.0%
3174361 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.60 46.0 3.25e-01 97.1% 24.8%
3237013 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.60 50.0 4.11e-01 100.0% 50.0%
3420624 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 46.0 4.07e-01 100.0% 57.1%
3391635 7579.1.1.2 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.58 44.0 2.90e-01 82.6% 61.3%
4132514 304.28.1.29 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › PF27591 0.58 52.0 4.08e-01 100.0% 74.5%
3801946 101.1.2.462 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.58 49.0 3.91e-01 100.0% 64.5%
3459794 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 47.0 4.18e-01 100.0% 66.0%
3441608 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 43.0 4.03e-01 100.0% 67.8%
3663727 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 46.0 4.10e-01 100.0% 63.8%
3313321 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 46.0 3.55e-01 100.0% 40.6%
3659873 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 46.0 4.04e-01 100.0% 61.9%
3313232 207.1.1.258 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WH_DRP 0.54 45.0 3.53e-01 100.0% 41.9%
3422463 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.54 47.0 4.14e-01 100.0% 66.7%
3423032 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.54 46.0 3.68e-01 100.0% 47.1%
4425756 101.1.2.764 ↗ alpha arrays › HTH › HTH › winged helix domain › RP-C 0.54 47.0 3.74e-01 100.0% 47.6%
3322387 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.54 45.0 3.48e-01 100.0% 40.6%
3444653 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.54 44.0 3.71e-01 100.0% 52.0%
5046617 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 3.12e-01 85.5% 98.4%
3451047 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 44.0 3.75e-01 100.0% 54.2%
5063374 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 38.0 3.11e-01 75.4% 59.3%
3426019 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 44.0 3.48e-01 100.0% 43.4%
4163738 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 44.0 3.51e-01 100.0% 44.0%
3620102 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.53 45.0 2.59e-01 100.0% 13.1%
3632795 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 42.0 3.71e-01 91.3% 93.6%
3435809 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 42.0 3.74e-01 100.0% 58.2%
3299261 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 43.0 3.71e-01 100.0% 55.8%
3501333 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.52 44.0 3.77e-01 98.6% 58.3%
3601018 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 39.0 3.66e-01 100.0% 64.4%
3372061 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 43.0 3.49e-01 100.0% 47.1%
3279792 2003.1.5.14 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.51 43.0 3.05e-01 92.8% 40.5%
5075752 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.51 38.0 3.65e-01 97.1% 68.2%
3597631 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.03e-01 100.0% 48.6%