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AY954958.1__AAX91286.1__X__00063

Bact-Vir

AY954958.1__AAX91286.1__X__00063

Identity

Accession:
AY954958 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_37

TaxID: 2936813

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.63 40.0 4.29e-01 76.5% 79.1%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 43.0 4.65e-01 76.5% 100.0%
1a68A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.59 49.0 4.23e-01 100.0% 98.9%
7phiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 47.0 3.85e-01 100.0% 80.9%
3ga1A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 45.0 3.66e-01 94.1% 71.7%
1cs3A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.57 47.0 3.73e-01 98.0% 66.4%
2ihcD01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.57 45.0 3.70e-01 94.1% 72.0%
3mq2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.11e-01 96.1% 36.7%
7d4rB01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 45.0 3.01e-01 94.1% 97.2%
3g9kD02 1.10.246.230 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 40.0 3.59e-01 88.2% 81.2%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.26e-01 76.5% 97.6%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 40.0 2.90e-01 92.2% 58.5%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.52 43.0 3.37e-01 92.2% 70.3%
3w7tA04 3.30.1390.40 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e 0.51 30.0 3.35e-01 70.6% 84.4%
4r0mA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 36.0 2.93e-01 78.4% 72.2%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.51 40.0 3.27e-01 100.0% 75.2%
4p7aA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 41.0 3.48e-01 100.0% 59.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034522 857.1.1.2 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 0.81 68.0 5.60e-01 98.0% 51.6%
3736936 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.62 52.0 4.35e-01 98.0% 84.2%
3499037 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 51.0 3.07e-01 100.0% 20.0%
3617913 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 47.0 4.82e-01 88.2% 100.0%
4002756 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 48.0 4.01e-01 100.0% 82.9%
4986404 4008.1.1.0 ↗ 0.59 47.0 4.75e-01 94.1% 98.0%
2391178 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 48.0 3.89e-01 100.0% 75.7%
3685819 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 50.0 3.99e-01 100.0% 97.3%
3939325 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 48.0 4.08e-01 100.0% 86.3%
4802636 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 47.0 3.82e-01 100.0% 73.7%
3370077 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 46.0 3.51e-01 98.0% 56.0%
3531922 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.58 47.0 3.82e-01 100.0% 73.0%
3549297 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.58 47.0 3.83e-01 98.0% 79.1%
3784150 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.58 48.0 3.80e-01 98.0% 69.6%
3487160 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 47.0 3.95e-01 100.0% 87.0%
1031361 103.1.1.50 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › EF-Ts_N 0.58 42.0 3.98e-01 86.3% 65.6%
3178506 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 47.0 3.26e-01 100.0% 41.4%
3502581 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 47.0 3.75e-01 100.0% 84.0%
3503779 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 46.0 3.76e-01 98.0% 73.6%
3923147 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 46.0 3.66e-01 98.0% 69.2%
3632874 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.57 47.0 3.39e-01 100.0% 43.1%
3220548 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.56 46.0 3.66e-01 100.0% 79.8%
4028631 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.56 43.0 4.11e-01 92.2% 92.3%
3242506 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 45.0 3.34e-01 100.0% 56.9%
4236344 103.1.1.28 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 0.56 40.0 3.95e-01 80.4% 74.5%
3549640 242.2.1.7 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › PF26577 0.56 44.0 3.58e-01 88.2% 63.0%
3935744 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 30.0 2.99e-01 78.4% 45.5%
4600941 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.55 43.0 3.00e-01 100.0% 56.0%
3249146 242.2.1.7 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › PF26577 0.54 43.0 3.62e-01 88.2% 70.0%
3988310 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.53 41.0 2.70e-01 94.1% 41.3%
5062171 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.24e-01 100.0% 41.3%
3892703 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.53 40.0 3.34e-01 88.2% 79.0%
2772552 243.5.1.2 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 0.53 40.0 3.20e-01 90.2% 78.3%
3388351 7503.1.1.23 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF28194 0.52 40.0 3.04e-01 100.0% 67.2%
3505284 386.1.1.19 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2 0.52 40.0 3.48e-01 98.0% 89.0%
4996564 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.52 39.0 3.47e-01 90.2% 78.8%
4946727 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.52 40.0 3.56e-01 90.2% 82.5%
4632895 212.1.1.9 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.52 42.0 3.35e-01 100.0% 59.2%
4959094 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 33.0 3.25e-01 86.3% 58.2%
4975598 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.51 37.0 2.46e-01 90.2% 42.1%
4651426 212.1.1.9 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.51 41.0 3.40e-01 100.0% 69.1%
D2 medium residues 116-166
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07768.16 best PVL_ORF50 27.1 6.10e-06 90.2% 27.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sf7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.72 54.0 3.32e-01 88.2% 14.8%
4aj5S00 6.10.250.1380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 50.0 4.01e-01 90.2% 47.7%