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AY954958.1__AAX91318.1__X__00071

Bact-Vir

AY954958.1__AAX91318.1__X__00071

Identity

Accession:
AY954958 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_37

TaxID: 2936813

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tqgA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.88 58.0 4.97e-01 80.6% 45.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 61.0 6.15e-01 76.4% 77.5%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 61.0 5.27e-01 86.1% 75.7%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 54.0 5.01e-01 100.0% 60.4%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 55.0 4.59e-01 95.8% 48.7%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 46.0 3.64e-01 84.7% 38.3%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 36.0 3.65e-01 84.7% 58.1%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 50.0 4.11e-01 100.0% 47.8%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 51.0 4.45e-01 97.2% 90.9%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 51.0 3.34e-01 95.8% 48.1%
1a7wA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 46.0 4.80e-01 93.1% 94.1%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 47.0 3.01e-01 100.0% 55.2%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.53 47.0 4.85e-01 95.8% 98.6%
1zbpA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 4.24e-01 93.1% 88.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3670746 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.88 63.0 5.18e-01 73.6% 44.2%
5010044 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.85 59.0 5.32e-01 73.6% 54.7%
3653693 109.4.1.1375 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYVN1_N 0.84 75.0 5.22e-01 100.0% 31.3%
3520822 4177.1.1.5 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.84 61.0 4.23e-01 76.4% 25.0%
1760269 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.82 58.0 4.93e-01 77.8% 46.6%
4994040 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.80 59.0 5.29e-01 77.8% 58.0%
5070203 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.80 70.0 4.31e-01 94.4% 21.1%
3741398 632.1.1.8 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › SOG2 0.79 54.0 4.42e-01 70.8% 40.8%
3721752 5086.1.1.170 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Not3 0.78 65.0 5.38e-01 90.3% 78.4%
4952876 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 53.0 4.90e-01 73.6% 58.9%
3779698 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.73 56.0 3.85e-01 100.0% 23.5%
3824167 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.70 61.0 4.67e-01 100.0% 44.0%
3386010 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.69 55.0 3.24e-01 86.1% 23.4%
3322490 109.3.1.382 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, E_motif 0.65 47.0 3.14e-01 77.8% 21.7%
3603032 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.63 44.0 4.21e-01 86.1% 62.4%
3598036 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.62 56.0 4.39e-01 98.6% 60.7%
3969091 109.4.1.203 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.80e-01 97.2% 58.9%