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AY954970.1__AAX92439.1__X__00148
Bact-VirAY954970.1__AAX92439.1__X__00148
Identity
- Accession:
- AY954970 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Taxonomy
TaxID: 2908167
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-65
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.78 | 60.0 | 4.82e-01 | 90.0% | 42.3% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.77 | 60.0 | 5.29e-01 | 90.0% | 58.1% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 53.0 | 5.66e-01 | 76.0% | 92.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 56.0 | 5.54e-01 | 90.0% | 78.8% |
| 3sszA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.74 | 62.0 | 4.62e-01 | 98.0% | 87.2% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.71 | 58.0 | 5.37e-01 | 98.0% | 71.0% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.68 | 61.0 | 5.44e-01 | 100.0% | 72.1% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.68 | 49.0 | 4.19e-01 | 82.0% | 47.0% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 54.0 | 3.48e-01 | 92.0% | 21.0% |
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 49.0 | 4.66e-01 | 86.0% | 66.7% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.65 | 56.0 | 4.03e-01 | 96.0% | 32.9% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 53.0 | 4.28e-01 | 92.0% | 55.6% |
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.65 | 48.0 | 4.21e-01 | 88.0% | 51.2% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.64 | 55.0 | 4.59e-01 | 94.0% | 92.9% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.63 | 53.0 | 4.65e-01 | 98.0% | 63.2% |
| 4ammA00 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.63 | 47.0 | 2.81e-01 | 100.0% | 10.7% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 56.0 | 3.28e-01 | 98.0% | 75.1% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.62 | 53.0 | 3.81e-01 | 98.0% | 74.2% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 49.0 | 3.02e-01 | 90.0% | 19.1% |
| 1n71B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 50.0 | 3.44e-01 | 92.0% | 56.4% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.61 | 48.0 | 4.17e-01 | 92.0% | 54.9% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 54.0 | 4.84e-01 | 100.0% | 73.5% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.59 | 49.0 | 3.89e-01 | 92.0% | 59.8% |
| 1xgsA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.43e-01 | 72.0% | 70.1% |
| 1z8sA02 | 6.10.140.360 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 42.0 | 4.39e-01 | 86.0% | 100.0% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.55 | 43.0 | 3.84e-01 | 94.0% | 66.7% |
| 2n7zA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 43.0 | 3.43e-01 | 96.0% | 75.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4319975 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.85 | 70.0 | 5.71e-01 | 90.0% | 51.1% |
| 4327215 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.84 | 68.0 | 5.18e-01 | 90.0% | 40.0% |
| 3596115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 57.0 | 4.18e-01 | 72.0% | 76.8% |
| None | — | 0.82 | 68.0 | 4.23e-01 | 92.0% | 17.5% | |
| 3278450 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.82 | 68.0 | 5.81e-01 | 92.0% | 60.0% |
| None | — | 0.82 | 68.0 | 4.20e-01 | 92.0% | 17.8% | |
| 3680918 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 61.0 | 5.68e-01 | 92.0% | 75.4% |
| 3385950 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 60.0 | 5.34e-01 | 98.0% | 64.3% |
| 3567213 | 109.3.1.176 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_3, Ank_4 | 0.73 | 57.0 | 3.70e-01 | 86.0% | 29.1% |
| 3979831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 50.0 | 4.64e-01 | 74.0% | 56.9% |
| 3283655 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.72 | 59.0 | 5.91e-01 | 96.0% | 88.0% |
| 5009434 | 11.1.1.157 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3501 | 0.71 | 56.0 | 4.07e-01 | 92.0% | 69.3% |
| 3793214 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 52.0 | 4.93e-01 | 84.0% | 66.7% |
| 4248629 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.70 | 53.0 | 5.53e-01 | 90.0% | 88.9% |
| 149872 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.70 | 60.0 | 5.14e-01 | 98.0% | 59.5% |
| 4944186 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.70 | 63.0 | 4.85e-01 | 100.0% | 56.0% |
| 3308828 | 375.1.9.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › PLAC8 | 0.70 | 61.0 | 4.94e-01 | 98.0% | 53.7% |
| 4942772 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 59.0 | 5.43e-01 | 96.0% | 73.8% |
| 314734 | 4982.1.1.2 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N | 0.68 | 52.0 | 4.49e-01 | 90.0% | 52.3% |
| 5084007 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 46.0 | 4.00e-01 | 72.0% | 50.7% |
| 3902100 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 58.0 | 4.83e-01 | 96.0% | 61.2% |
| 3855461 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.66 | 58.0 | 4.79e-01 | 96.0% | 61.2% |
| 3556027 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 58.0 | 4.79e-01 | 96.0% | 61.2% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.66 | 59.0 | 3.76e-01 | 98.0% | 22.5% |
| 3388682 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.65 | 58.0 | 4.86e-01 | 100.0% | 82.4% |
| 3491418 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 57.0 | 4.95e-01 | 96.0% | 69.3% |
| 2979225 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.65 | 51.0 | 3.59e-01 | 92.0% | 26.7% |
| 2712165 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.65 | 47.0 | 4.95e-01 | 96.0% | 88.9% |
| 3478515 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.64 | 54.0 | 5.49e-01 | 94.0% | 92.0% |
| 3171915 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.62 | 50.0 | 4.29e-01 | 92.0% | 83.5% |
| 3344575 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.61 | 48.0 | 3.28e-01 | 92.0% | 23.1% |
| 3185682 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.60 | 53.0 | 3.45e-01 | 100.0% | 71.9% |
| 4261007 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.60 | 44.0 | 4.16e-01 | 84.0% | 76.9% |
| 4883260 | 536.1.1.2 ↗ | alpha arrays › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › NdhL | 0.57 | 43.0 | 3.32e-01 | 90.0% | 36.7% |
| 4948659 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.56 | 48.0 | 3.31e-01 | 100.0% | 39.5% |