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Ac68-like_protein

Euk-Vir

Oryctes_rhinoceros_nudivirus

Ac68-like_protein__YP_002321383__Oryctes_rhinoceros_nudivirus__92521

Identity

Accession:
YP_002321383 ↗
Protein ID:
Ac68-like_protein
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Oryctes_rhinoceros_nudivirus

TaxID: 92521

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-88
PDB
Domain cluster: rep: PIF-6__YP_009116703__Tipula_oleracea_nudivirus__1546257__D5-88
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 46.0 4.08e-01 86.9% 82.5%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 33.0 3.40e-01 90.5% 63.0%
6tmfI00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.54 41.0 3.20e-01 85.7% 57.0%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 34.0 3.21e-01 81.0% 52.3%
1vkwA02 3.40.109.30 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 0.52 41.0 3.99e-01 100.0% 76.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 28.0 3.22e-01 81.0% 72.4%
2id1A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 43.0 3.98e-01 90.5% 80.8%
2o5aA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 42.0 3.99e-01 90.5% 80.4%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.50 42.0 3.24e-01 95.2% 55.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984450 327.13.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH 0.58 34.0 4.30e-01 90.5% 100.0%
4543273 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.56 36.0 4.04e-01 91.7% 84.6%
3476874 316.1.1.5 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS 0.55 45.0 4.01e-01 89.3% 71.7%
4087536 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.54 46.0 3.41e-01 96.4% 80.4%
3486280 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 45.0 3.48e-01 96.4% 92.5%
4011438 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.35e-01 84.5% 78.7%
3898819 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 40.0 2.49e-01 84.5% 44.2%
3734448 101.1.2.51 ↗ alpha arrays › HTH › HTH › winged helix domain › Sec62 0.51 39.0 3.48e-01 84.5% 90.8%
3575665 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.51 43.0 2.71e-01 95.2% 50.1%
3387141 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.50 35.0 3.86e-01 94.0% 92.3%
4933638 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 35.0 3.03e-01 73.8% 69.3%
3847882 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.50 43.0 2.53e-01 100.0% 69.2%