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Adenylosuccinate_synthetase
Euk-VirPandoravirus_dulcis
Adenylosuccinate_synthetase__YP_009430286__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_009430286 ↗
- Protein ID:
- Adenylosuccinate_synthetase
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 134-260
Domain cluster:
rep: adenylosuccinate_synthetase__YP_009119049__Pandoravirus_inopinatum__1605721__D137-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00709.28 best | Adenylsucc_synt | 59.9 | 2.80e-16 | 92.1% | 17.5% |
D2
medium
residues 24-123_271-327
Domain cluster:
rep: adenylosuccinate_synthetase__YP_009000992__Pithovirus_sibericum__1450746__D5-109_198-265
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00709.28 best | Adenylsucc_synt | 97.5 | 1.00e-27 | 62.4% | 20.4% |
| PF00709.28 | Adenylsucc_synt | 59.9 | 2.70e-16 | 40.8% | 13.5% |
D3
medium
residues 328-352_429-459_494-548
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00709.28 best | Adenylsucc_synt | 34.3 | 1.60e-08 | 40.5% | 10.1% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p9bA03 | 3.90.170.10 | Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 | 0.80 | 71.0 | 6.11e-01 | 92.8% | 100.0% |
| 1adeA03 | 3.90.170.10 | Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 | 0.79 | 70.0 | 5.98e-01 | 92.8% | 97.0% |
| 4wuiA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 33.0 | 2.73e-01 | 94.6% | 29.3% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 32.0 | 3.28e-01 | 91.9% | 55.0% |
| 3olqA00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 2.99e-01 | 80.2% | 51.3% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 44.0 | 3.43e-01 | 93.7% | 98.5% |
| 4rn7A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.52 | 45.0 | 3.80e-01 | 93.7% | 93.0% |
| 2xadA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.52 | 46.0 | 3.50e-01 | 98.2% | 97.7% |
| 3ieyA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 37.0 | 3.86e-01 | 97.3% | 82.0% |
| 6uczB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.52 | 42.0 | 3.20e-01 | 95.5% | 37.0% |
| 3ja8601 | 3.30.1640.10 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 | 0.52 | 38.0 | 3.96e-01 | 85.6% | 84.8% |
| 3ndzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 46.0 | 3.24e-01 | 98.2% | 45.8% |
| 1bxkA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.37e-01 | 94.6% | 56.0% |
| 3nklB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 4.30e-01 | 97.3% | 95.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4477211 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.81 | 71.0 | 4.60e-01 | 91.0% | 37.2% |
| 1883519 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.81 | 72.0 | 4.66e-01 | 92.8% | 37.3% |
| 4158935 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.81 | 71.0 | 4.65e-01 | 91.9% | 37.0% |
| 4258627 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.81 | 72.0 | 4.64e-01 | 92.8% | 36.8% |
| 3495929 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 72.0 | 4.66e-01 | 92.8% | 38.1% |
| 4472870 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.80 | 72.0 | 4.56e-01 | 92.8% | 35.8% |
| 4036208 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.80 | 72.0 | 4.66e-01 | 94.6% | 37.2% |
| 4353609 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.80 | 72.0 | 4.61e-01 | 93.7% | 36.6% |
| 4203696 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.79 | 70.0 | 4.49e-01 | 92.8% | 39.3% |
| 4933558 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.79 | 69.0 | 4.48e-01 | 91.0% | 38.6% |
| 4180893 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.79 | 72.0 | 4.67e-01 | 96.4% | 38.0% |
| 4259208 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.79 | 70.0 | 4.55e-01 | 92.8% | 38.4% |
| 4942154 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.78 | 69.0 | 4.60e-01 | 93.7% | 42.8% |
| 4291957 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.75 | 67.0 | 4.33e-01 | 93.7% | 41.8% |
| 5056176 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.73 | 65.0 | 4.40e-01 | 92.8% | 39.7% |
| 3969980 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 43.0 | 3.44e-01 | 94.6% | 31.6% |
| 4036504 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.71 | 64.0 | 4.39e-01 | 94.6% | 35.2% |
| 4937475 | 2004.1.1.43 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 | 0.70 | 43.0 | 3.40e-01 | 94.6% | 30.7% |
| 5015405 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.64 | 40.0 | 3.37e-01 | 91.9% | 37.4% |
| 3471805 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.53 | 45.0 | 3.17e-01 | 94.6% | 48.1% |
| 4991319 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 39.0 | 3.17e-01 | 94.6% | 40.5% |
| 4028598 | 3003.1.1.1 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N | 0.52 | 41.0 | 3.86e-01 | 85.6% | 77.1% |
| 3251090 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 28.0 | 2.57e-01 | 70.3% | 36.8% |
| 5040846 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 43.0 | 4.07e-01 | 91.9% | 96.3% |
| 4050260 | 2007.2.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 | 0.50 | 41.0 | 3.47e-01 | 91.0% | 95.0% |
D4
medium
residues 359-420