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Alkylated_-methylated-_DNA_repair_protein
Euk-VirChrysochromulina_ericina_virus
Alkylated_-methylated-_DNA_repair_protein__YP_009173278__Chrysochromulina_ericina_virus__455364
Identity
- Accession:
- YP_009173278 ↗
- Protein ID:
- Alkylated_-methylated-_DNA_repair_protein
- Kingdom:
- euk
Quality
85.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Chrysochromulina_ericina_virus
TaxID: 455364
Cluster
View cluster (250 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-17_99-189
Domain cluster:
rep: alkylated_DNA_repair_protein__YP_009119480__Pandoravirus_inopinatum__1605721__D88-172
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13532.13 best | 2OG-FeII_Oxy_2 | 52.9 | 8.20e-14 | 86.1% | 47.9% |
D2
medium
residues 18-98
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ie5A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.82 | 75.0 | 5.13e-01 | 100.0% | 44.7% |
| 3btxA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.77 | 70.0 | 5.15e-01 | 100.0% | 40.7% |
| 2iuwA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.76 | 69.0 | 5.09e-01 | 100.0% | 40.0% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.50 | 45.0 | 3.99e-01 | 100.0% | 83.2% |
| 3pjvD01 | 3.30.110.200 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.50 | 26.0 | 2.71e-01 | 100.0% | 47.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3748779 | 10.12.1.48 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FTO_NTD | 0.82 | 75.0 | 4.92e-01 | 100.0% | 44.8% |
| 3881430 | 10.12.1.48 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FTO_NTD | 0.81 | 74.0 | 5.02e-01 | 100.0% | 44.2% |
| None | — | 0.80 | 73.0 | 4.97e-01 | 100.0% | 41.8% | |
| 3644051 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.75 | 67.0 | 4.82e-01 | 100.0% | 42.9% |
| 4616368 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.75 | 68.0 | 4.90e-01 | 100.0% | 37.3% |
| 3889037 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.74 | 67.0 | 4.86e-01 | 100.0% | 37.7% |
| 4017724 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.74 | 66.0 | 4.45e-01 | 100.0% | 28.0% |
| 3245231 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.71 | 60.0 | 4.23e-01 | 100.0% | 31.7% |
| 3954494 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.67 | 56.0 | 4.22e-01 | 100.0% | 38.9% |
| 3315687 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.65 | 57.0 | 4.13e-01 | 100.0% | 42.6% |
| 3672461 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.64 | 57.0 | 4.06e-01 | 100.0% | 38.0% |
| 3303622 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 55.0 | 4.02e-01 | 100.0% | 39.6% |
| 3355814 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.54 | 23.0 | 3.11e-01 | 100.0% | 70.0% |
| 3600983 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 45.0 | 3.70e-01 | 95.1% | 84.5% |
| 3504256 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.53 | 30.0 | 3.51e-01 | 97.5% | 97.7% |
| 3705318 | 304.34.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases | 0.51 | 37.0 | 2.91e-01 | 79.0% | 57.4% |