←Back to structures

Amine_oxidase

Euk-Vir

Only_Syngen_Nebraska_virus_5

Amine_oxidase__YP_009325616__Only_Syngen_Nebraska_virus_5__1917232

Identity

Accession:
YP_009325616 ↗
Protein ID:
Amine_oxidase
Kingdom:
euk

Quality

64.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chlorovirus› Only_Syngen_Nebraska_virus_5

TaxID: 1917232

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79_172-228_354-382
PDB
Domain cluster: rep: NC_048676.1__YP_009835238.1__HWB31_gp36__00036__D15-55_120-177_281-339
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13450.13 best NAD_binding_8 41.7 1.60e-10 41.4% 100.0%
D2 high residues 97-171
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1reoA03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.75 60.0 5.50e-01 88.0% 77.2%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.71 57.0 5.35e-01 86.7% 98.9%
1o5wA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.67 58.0 4.02e-01 100.0% 40.6%
1o5wB03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.67 54.0 5.12e-01 90.7% 90.2%
2yg5A03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.65 53.0 4.98e-01 89.3% 90.3%
4i59A03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.65 54.0 5.08e-01 93.3% 91.3%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 3.47e-01 100.0% 23.5%
3ka7A02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.59 50.0 3.79e-01 98.7% 60.2%
3nrnA02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.59 52.0 3.98e-01 100.0% 66.5%
6e1mA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 41.0 3.90e-01 81.3% 89.5%
6bekD00 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 41.0 3.97e-01 82.7% 71.9%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 39.0 3.30e-01 76.0% 67.7%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 42.0 3.39e-01 92.0% 45.0%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 38.0 4.01e-01 78.7% 91.0%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.52 37.0 3.73e-01 77.3% 82.3%
4y97D00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.50 35.0 2.72e-01 74.7% 74.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.73 65.0 4.25e-01 100.0% 26.3%
3758906 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.69 58.0 5.24e-01 94.7% 81.0%
None — 0.66 57.0 3.95e-01 100.0% 37.1%
3479237 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.64 51.0 5.30e-01 92.0% 100.0%
3317564 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.61 51.0 4.33e-01 94.7% 83.1%
3407438 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 47.0 4.30e-01 86.7% 80.0%
3480965 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 50.0 4.66e-01 93.3% 84.2%
4337738 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 47.0 4.20e-01 89.3% 91.3%
3470303 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 45.0 4.44e-01 82.7% 85.0%
3611982 109.4.1.15 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.59 34.0 2.77e-01 89.3% 29.0%
3647110 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.35e-01 80.0% 46.7%
3491972 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.58 44.0 4.41e-01 81.3% 86.7%
4298977 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 49.0 4.88e-01 96.0% 96.2%
4215625 108.1.1.149 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF5580 0.58 49.0 4.55e-01 98.7% 80.0%
3829390 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.63e-01 96.0% 94.4%
3924465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.70e-01 81.3% 71.7%
4144849 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.56 43.0 3.86e-01 85.3% 72.2%
3425117 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.56 40.0 3.76e-01 77.3% 71.6%
3351309 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.55 40.0 3.07e-01 78.7% 44.7%
3393922 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 39.0 4.04e-01 77.3% 92.6%
3803557 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.55 43.0 4.24e-01 89.3% 92.5%
3234000 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.54 40.0 3.89e-01 81.3% 78.8%
3313301 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.54 38.0 3.74e-01 76.0% 84.7%
3717850 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.54 39.0 3.68e-01 81.3% 70.0%
3627174 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.54 38.0 3.76e-01 77.3% 76.5%
3886518 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.53 39.0 3.98e-01 80.0% 81.3%
3369428 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.83e-01 81.3% 78.6%
3923850 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.52 38.0 3.89e-01 81.3% 89.3%
3455078 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.52 39.0 3.80e-01 85.3% 87.1%
4807989 4982.2.1.0 ↗ alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain 0.51 33.0 3.49e-01 84.0% 75.8%
3394135 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.50 38.0 3.68e-01 85.3% 81.1%
D3 medium residues 240-341
PDB