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Ankyrin_repeat_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

Ankyrin_repeat_domain_containing_protein__YP_009480685__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480685 ↗
Protein ID:
Ankyrin_repeat_domain_containing_protein
Kingdom:
euk

Quality

77.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (103 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 105-161
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.59 45.0 3.77e-01 84.2% 69.6%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.58 40.0 3.01e-01 71.9% 56.2%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.53 42.0 3.60e-01 96.5% 72.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585102 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.62 49.0 3.74e-01 87.7% 46.4%
3788827 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.61 43.0 4.17e-01 77.2% 86.2%
4065433 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.01e-01 91.2% 18.2%
3893471 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.55 40.0 3.98e-01 82.5% 98.3%
D2 medium residues 272-336
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009480689__Pandoravirus_macleodensis__2107707__D456-515
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13637.13 best Ank_4 26.5 8.90e-06 66.1% 96.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lvqE02 1.25.40.950 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.78 64.0 6.18e-01 90.8% 98.6%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.78 59.0 5.51e-01 81.5% 96.2%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 53.0 4.68e-01 86.2% 85.0%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 51.0 4.84e-01 81.5% 97.4%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 56.0 4.22e-01 93.8% 55.4%
2jifA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.66 49.0 4.13e-01 81.5% 73.7%
3ii9B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.66 49.0 3.95e-01 80.0% 63.8%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 43.0 3.14e-01 72.3% 74.9%
7uvpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.33e-01 92.3% 72.1%
1z6oA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 42.0 2.94e-01 72.3% 63.7%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 48.0 4.12e-01 92.3% 91.2%
3vnxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 41.0 2.95e-01 70.8% 67.7%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 50.0 3.71e-01 100.0% 94.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 3.61e-01 89.2% 79.9%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 49.0 3.00e-01 100.0% 26.8%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.92e-01 92.3% 94.3%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.55 41.0 3.50e-01 81.5% 92.6%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 41.0 3.07e-01 89.2% 83.2%
1vjxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 37.0 2.95e-01 78.5% 90.6%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.51 43.0 2.72e-01 100.0% 46.0%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 40.0 3.64e-01 92.3% 87.5%
6w6jD01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.50 41.0 3.30e-01 92.3% 94.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267273 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.87 79.0 6.43e-01 100.0% 55.7%
3248202 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.87 80.0 5.70e-01 100.0% 39.4%
3695738 109.3.1.232 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_KRIT1 0.85 77.0 4.65e-01 100.0% 20.5%
3198211 109.3.1.347 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_KRIT1 0.83 77.0 4.68e-01 100.0% 21.7%
3254410 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.81 73.0 5.84e-01 100.0% 52.8%
3978045 109.3.1.447 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF30167 0.76 69.0 5.32e-01 100.0% 55.0%
3311394 109.4.1.1296 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 0.75 65.0 4.00e-01 100.0% 24.0%
3808965 109.4.1.1519 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.74 65.0 4.54e-01 100.0% 38.6%
3803663 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.73 64.0 4.31e-01 98.5% 68.3%
3426448 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.73 63.0 4.91e-01 100.0% 54.7%
3440221 109.4.1.1308 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 0.72 63.0 3.81e-01 100.0% 18.2%
3299051 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 62.0 4.72e-01 100.0% 51.9%
3455322 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.71 62.0 4.68e-01 100.0% 51.5%
3818641 109.4.1.2070 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, E_motif 0.71 61.0 3.85e-01 98.5% 22.3%
3347497 109.4.1.1331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.71 57.0 3.88e-01 89.2% 31.0%
3296368 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.71 62.0 4.45e-01 100.0% 43.1%
3432136 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.71 62.0 4.69e-01 100.0% 50.0%
3321343 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.71 62.0 4.17e-01 100.0% 31.8%
3296860 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 58.0 3.82e-01 90.8% 27.8%
3321932 109.4.1.1365 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 0.70 62.0 4.91e-01 100.0% 60.0%
3833782 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.70 57.0 4.45e-01 90.8% 51.0%
3431787 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.70 61.0 4.51e-01 100.0% 46.3%
3315113 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.70 60.0 3.92e-01 98.5% 26.6%
3678745 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.70 59.0 3.99e-01 93.8% 31.7%
3832526 109.4.1.1860 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, Eplus_motif, E_motif 0.69 60.0 3.63e-01 100.0% 15.5%
3679964 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.69 60.0 4.72e-01 98.5% 57.1%
3600491 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 59.0 4.32e-01 98.5% 44.7%
3367646 109.7.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › PPR, PPR_2 0.69 59.0 5.45e-01 98.5% 94.1%
3679812 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 60.0 3.40e-01 98.5% 10.4%
3352831 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.69 60.0 3.72e-01 100.0% 22.0%
3826564 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.69 60.0 3.41e-01 100.0% 11.2%
3591682 109.4.1.1356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, PPR_long 0.69 59.0 3.69e-01 100.0% 20.5%
3806180 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.68 59.0 3.40e-01 100.0% 11.6%
3380640 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 4.06e-01 100.0% 32.0%
3806215 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.68 59.0 3.82e-01 100.0% 25.9%
3821935 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.68 61.0 4.12e-01 100.0% 46.3%
3826660 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 4.74e-01 100.0% 63.0%
3805408 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.68 55.0 4.82e-01 90.8% 74.0%
3462080 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.68 57.0 3.62e-01 100.0% 21.6%
3656332 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 58.0 4.14e-01 100.0% 38.1%
3297095 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 58.0 4.25e-01 100.0% 46.5%
3336480 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.67 57.0 3.74e-01 100.0% 25.8%
3383595 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 57.0 4.91e-01 96.9% 74.3%
3362009 109.4.1.1334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.67 57.0 3.65e-01 100.0% 23.3%
3438912 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 55.0 3.84e-01 100.0% 34.0%
3317967 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.65 55.0 3.19e-01 100.0% 12.8%
3818642 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 54.0 3.78e-01 100.0% 33.2%
3315972 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.65 54.0 3.38e-01 100.0% 19.8%
3649419 109.4.1.1525 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase 0.65 54.0 3.45e-01 100.0% 21.9%
3681440 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.64 54.0 3.22e-01 100.0% 15.2%
3377363 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.64 53.0 3.08e-01 100.0% 11.6%
3681867 109.4.1.2177 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif, TPR_24 0.64 53.0 3.31e-01 100.0% 17.7%
3320740 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 54.0 4.14e-01 100.0% 48.5%
3385274 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 52.0 3.72e-01 100.0% 37.8%
3641692 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 51.0 3.97e-01 100.0% 47.1%
5040245 140.1.1.9 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3 0.60 42.0 3.05e-01 75.4% 64.2%
3323134 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.59 50.0 4.09e-01 100.0% 81.5%
3700445 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.53 35.0 2.94e-01 70.8% 71.5%
D3 medium residues 337-436
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009482714__Pandoravirus_quercus__2107709__D78-176