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Apc11-like_protein

Euk-Vir

Nile_crocodilepox_virus

Apc11-like_protein__YP_784237__Nile_crocodilepox_virus__1285600

Identity

Accession:
YP_784237 ↗
Protein ID:
Apc11-like_protein
Kingdom:
euk

Quality

70.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Crocodylidpoxvirus› Nile_crocodilepox_virus

TaxID: 1285600

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-79
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 47.0 4.74e-01 78.0% 97.5%
4aycA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 47.0 3.86e-01 80.5% 44.6%
2lgvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 52.0 4.13e-01 100.0% 52.0%
4r2yC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 45.0 3.91e-01 73.2% 47.7%
2c2vV00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 46.0 3.99e-01 80.5% 60.0%
4v3lC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 48.0 4.16e-01 87.8% 55.1%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 45.0 3.82e-01 80.5% 56.8%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 49.0 4.13e-01 92.7% 60.3%
5dinA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 50.0 3.72e-01 100.0% 57.5%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 45.0 3.93e-01 92.7% 51.4%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 45.0 3.80e-01 100.0% 82.6%
1yvuA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 43.0 2.98e-01 85.4% 98.7%
2v5mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.05e-01 78.0% 44.2%
1itcA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 42.0 2.54e-01 100.0% 33.2%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.54 41.0 2.68e-01 92.7% 97.4%
2id5D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.20e-01 87.8% 50.0%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 36.0 2.68e-01 85.4% 32.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514786 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.80 58.0 5.43e-01 82.9% 64.0%
3407405 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.79 58.0 4.88e-01 80.5% 47.1%
3478980 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 57.0 4.46e-01 80.5% 36.7%
3589328 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 55.0 5.73e-01 78.0% 94.3%
4988323 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.75 60.0 4.68e-01 92.7% 41.1%
3551806 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.74 55.0 4.19e-01 80.5% 34.0%
3415372 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.74 55.0 4.55e-01 80.5% 45.3%
3741136 376.1.1.67 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3H2C3 0.74 54.0 5.31e-01 80.5% 73.3%
3397947 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.74 55.0 4.09e-01 80.5% 33.3%
3620336 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 51.0 5.30e-01 78.0% 100.0%
3575029 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.71 51.0 4.29e-01 80.5% 45.3%
3419664 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.71 56.0 5.04e-01 95.1% 61.7%
4440959 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 51.0 5.13e-01 80.5% 97.5%
3610797 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.69 50.0 3.17e-01 80.5% 15.1%
3306063 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.69 49.0 4.20e-01 80.5% 45.3%
3424305 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 49.0 3.95e-01 80.5% 37.8%
3508056 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.68 47.0 4.15e-01 75.6% 47.7%
3591945 376.1.1.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1 0.68 54.0 5.12e-01 100.0% 81.8%
3219105 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 51.0 3.49e-01 87.8% 23.0%
3239537 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 54.0 4.45e-01 92.7% 61.3%
4505851 375.1.1.18 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 0.67 57.0 3.53e-01 97.6% 34.1%
3469438 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.67 48.0 3.83e-01 78.0% 36.7%
4252085 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 48.0 4.60e-01 80.5% 68.0%
3595539 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 47.0 4.20e-01 75.6% 51.7%
3516134 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.67 56.0 3.44e-01 97.6% 30.6%
3591477 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 47.0 3.84e-01 80.5% 37.8%
3924623 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.67 49.0 4.52e-01 80.5% 80.0%
3424334 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 46.0 4.56e-01 75.6% 71.1%
3998568 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 47.0 4.54e-01 80.5% 66.0%
3300282 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 47.0 4.57e-01 80.5% 70.8%
4099077 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.66 47.0 3.41e-01 78.0% 26.4%
3211190 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.65 49.0 4.37e-01 87.8% 60.0%
3404818 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.65 45.0 4.10e-01 75.6% 51.7%
3230227 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 48.0 3.80e-01 87.8% 57.0%
4368211 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.63 47.0 3.58e-01 80.5% 42.6%
3238348 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 50.0 3.40e-01 95.1% 22.3%
3244227 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 48.0 3.95e-01 92.7% 52.9%
3808995 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.62 44.0 3.54e-01 80.5% 46.3%
3238968 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 46.0 4.58e-01 90.2% 84.4%
3718655 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.60 48.0 3.87e-01 100.0% 60.2%
4195048 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 46.0 4.17e-01 92.7% 85.0%
3705930 377.1.1.20 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.59 40.0 3.81e-01 70.7% 60.0%
4945569 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.58 48.0 3.35e-01 100.0% 44.5%
3998767 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.58 45.0 4.24e-01 95.1% 96.4%
3711991 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 41.0 3.04e-01 80.5% 35.4%
3692054 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 38.0 2.85e-01 80.5% 25.4%
3336588 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 35.0 2.22e-01 70.7% 16.9%
3994329 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.51 39.0 3.08e-01 90.2% 48.0%