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Appr-1-p_processing_protein
Euk-VirShrimp_hemocyte_iridescent_virus
Appr-1-p_processing_protein__YP_010084916__Shrimp_hemocyte_iridescent_virus__2039780
Identity
- Accession:
- YP_010084916 ↗
- Protein ID:
- Appr-1-p_processing_protein
- Kingdom:
- euk
Quality
79.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Shrimp_hemocyte_iridescent_virus
TaxID: 2039780
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-163
Domain cluster:
rep: MN445183.1__QKE54431.1__ACSA002_1170__00117__D11-204
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4j5rA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.84 | 70.0 | 7.47e-01 | 100.0% | 98.6% |
| 3gpgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.78 | 65.0 | 6.60e-01 | 100.0% | 87.0% |
| 3ejgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.77 | 64.0 | 6.43e-01 | 100.0% | 84.8% |
| 2acfB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.77 | 64.0 | 6.29e-01 | 100.0% | 81.5% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.76 | 65.0 | 6.60e-01 | 100.0% | 91.1% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.71 | 65.0 | 6.13e-01 | 100.0% | 82.9% |
| 3lyhA00 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 39.0 | 4.47e-01 | 93.2% | 82.5% |
| 5nthA01 | 3.40.50.10590 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases | 0.62 | 56.0 | 5.28e-01 | 100.0% | 81.8% |
| 3nv7A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 29.0 | 3.00e-01 | 93.2% | 44.5% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 4.88e-01 | 96.9% | 92.7% |
| 2vlbC00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 41.0 | 3.62e-01 | 97.5% | 47.5% |
| 6feaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 44.0 | 4.20e-01 | 96.9% | 65.8% |
| 3u7qB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 45.0 | 4.70e-01 | 96.9% | 87.7% |
| 4joqA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 44.0 | 4.58e-01 | 96.9% | 83.2% |
| 3i2vA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.56 | 37.0 | 4.13e-01 | 98.8% | 86.3% |
| 2ex2A02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.55 | 31.0 | 3.71e-01 | 87.7% | 84.5% |
| 6pznB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 4.06e-01 | 92.0% | 97.5% |
| 7o71E01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.64e-01 | 93.2% | 71.3% |
| 2cx6A00 | 3.30.370.10 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › Barstar-like | 0.53 | 30.0 | 3.84e-01 | 92.0% | 100.0% |
| 6jpkA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 47.0 | 4.00e-01 | 100.0% | 63.0% |
| 3ie7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 45.0 | 3.64e-01 | 92.6% | 54.7% |
| 5f5nA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.69e-01 | 92.0% | 63.0% |
| 1hdoA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 4.18e-01 | 93.2% | 97.6% |
| 2vedA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 47.0 | 4.08e-01 | 100.0% | 67.9% |
| 1iqpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 4.02e-01 | 98.1% | 80.4% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 4.21e-01 | 93.2% | 85.6% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 43.0 | 3.83e-01 | 92.6% | 100.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078574 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.83 | 71.0 | 7.53e-01 | 100.0% | 98.6% |
| 3734095 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.81 | 76.0 | 6.94e-01 | 98.8% | 98.5% |
| 5005226 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.80 | 66.0 | 7.15e-01 | 100.0% | 100.0% |
| 223677 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.79 | 67.0 | 6.70e-01 | 100.0% | 86.7% |
| 136666 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.76 | 65.0 | 6.41e-01 | 100.0% | 85.1% |
| 4310582 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.76 | 72.0 | 7.15e-01 | 100.0% | 97.0% |
| 3892178 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.74 | 68.0 | 6.23e-01 | 100.0% | 76.1% |
| 3234469 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.70 | 66.0 | 5.37e-01 | 100.0% | 68.1% |
| 5019274 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 48.0 | 4.79e-01 | 96.9% | 76.5% |
| 4565019 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.62 | 38.0 | 4.66e-01 | 92.6% | 95.2% |
| 3327055 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.59 | 37.0 | 3.98e-01 | 92.6% | 71.4% |
| 2454827 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.59 | 37.0 | 4.41e-01 | 92.6% | 95.3% |
| 5059444 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.58 | 44.0 | 4.59e-01 | 97.5% | 84.7% |
| 5016537 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 53.0 | 3.99e-01 | 100.0% | 72.0% |
| 3838354 | 2004.1.1.63 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE | 0.57 | 53.0 | 3.87e-01 | 100.0% | 57.7% |
| 5019748 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 36.0 | 4.11e-01 | 92.0% | 85.0% |
| 3292286 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.57 | 39.0 | 4.42e-01 | 93.8% | 92.0% |
| 3261127 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.56 | 43.0 | 3.21e-01 | 100.0% | 31.5% |
| 5071695 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.56 | 49.0 | 4.20e-01 | 100.0% | 59.6% |
| 5019115 | 2004.1.1.260 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS | 0.56 | 46.0 | 4.24e-01 | 100.0% | 69.3% |
| 3887584 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.53 | 46.0 | 3.35e-01 | 93.2% | 35.1% |
| 3954802 | 2004.1.1.90 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobA_CobO_BtuR | 0.53 | 45.0 | 4.24e-01 | 100.0% | 75.9% |
| 3909737 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 45.0 | 4.32e-01 | 92.0% | 78.9% |
| 3088263 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.53 | 45.0 | 3.59e-01 | 91.4% | 65.7% |
| 3023622 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 45.0 | 3.59e-01 | 91.4% | 65.7% |
| 2557395 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 46.0 | 3.62e-01 | 95.1% | 67.6% |
| 3694738 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.52 | 46.0 | 4.28e-01 | 96.3% | 89.5% |
| 3215319 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 45.0 | 3.89e-01 | 92.6% | 65.2% |
| 5010471 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.52 | 45.0 | 4.26e-01 | 97.5% | 76.9% |
| 4984756 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.52 | 41.0 | 3.60e-01 | 97.5% | 54.7% |
| 4451691 | 7512.1.1.24 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 | 0.52 | 45.0 | 3.79e-01 | 94.4% | 77.2% |
| 5025627 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.52 | 48.0 | 4.14e-01 | 100.0% | 86.4% |
| None | — | 0.52 | 45.0 | 3.69e-01 | 92.0% | 62.8% | |
| 2606908 | 7577.1.1.4 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC | 0.52 | 48.0 | 3.32e-01 | 98.8% | 54.6% |
| 3268413 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.51 | 42.0 | 3.68e-01 | 100.0% | 59.1% |
| 2881682 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.51 | 47.0 | 4.34e-01 | 100.0% | 84.0% |
| 3260433 | 7577.1.1.4 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC | 0.51 | 47.0 | 3.22e-01 | 98.8% | 51.9% |
| 4601394 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.51 | 47.0 | 4.54e-01 | 100.0% | 96.7% |
| 3284233 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.51 | 43.0 | 3.57e-01 | 92.0% | 64.8% |
| 4125319 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.51 | 46.0 | 4.40e-01 | 100.0% | 91.6% |
| 4945226 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 46.0 | 3.79e-01 | 100.0% | 58.5% |
| 4274853 | 2003.1.1.61 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR | 0.50 | 45.0 | 3.75e-01 | 98.8% | 82.4% |
| 3740291 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.50 | 45.0 | 4.03e-01 | 100.0% | 79.6% |