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As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00017

Bact-Vir

As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7eq1R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 44.0 3.12e-01 88.1% 52.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.55 34.0 3.84e-01 82.1% 81.2%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 37.0 3.05e-01 72.6% 56.7%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 40.0 3.54e-01 98.8% 57.6%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.51 35.0 3.22e-01 81.0% 53.1%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 45.0 3.71e-01 98.8% 96.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027991 4984.1.1.0 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.56 40.0 3.82e-01 88.1% 65.3%
4957093 3456.1.1.1 extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.52 34.0 3.07e-01 82.1% 47.1%