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As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00043
Bact-VirAs_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00043
Identity
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-63
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n4dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.75 | 53.0 | 4.02e-01 | 75.0% | 71.5% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 49.0 | 4.83e-01 | 88.3% | 71.9% |
| 1cdzA00 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.55 | 40.0 | 3.47e-01 | 91.7% | 50.0% |
| 3p24C02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.53 | 40.0 | 2.82e-01 | 81.7% | 57.7% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 40.0 | 3.49e-01 | 83.3% | 86.0% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 35.0 | 2.85e-01 | 73.3% | 95.4% |
| 1rjgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 2.62e-01 | 86.7% | 21.0% |
| 7phiA01 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.51 | 44.0 | 3.61e-01 | 96.7% | 54.5% |
| 3edgA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 37.0 | 2.59e-01 | 85.0% | 24.1% |
| 4iq0C02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 37.0 | 2.69e-01 | 78.3% | 83.4% |
| 3rkrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 2.64e-01 | 83.3% | 36.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4093853 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.56 | 48.0 | 4.37e-01 | 98.3% | 92.8% |
| 3535205 | 226.1.1.46 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BACK | 0.54 | 39.0 | 2.89e-01 | 78.3% | 41.1% |
| 4990479 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 41.0 | 2.85e-01 | 83.3% | 32.2% |
| 5056130 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.54 | 39.0 | 3.39e-01 | 85.0% | 49.5% |
| 5049828 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.53 | 36.0 | 2.32e-01 | 70.0% | 39.7% |
| 5002385 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 37.0 | 3.00e-01 | 80.0% | 39.1% |
| 4120818 | 7523.1.1.10 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG | 0.52 | 38.0 | 3.22e-01 | 83.3% | 98.3% |
| 3947965 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.52 | 41.0 | 3.48e-01 | 96.7% | 94.2% |
| 4529871 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 36.0 | 3.14e-01 | 75.0% | 85.3% |