←Back to structures
As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00048
Bact-VirAs_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-77
Domain cluster:
rep: ALT_09252017_20_scaffold_186_prodigal-single.1__X__X__00004__D1-56
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.74 | 49.0 | 5.41e-01 | 77.1% | 87.3% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.71 | 43.0 | 5.16e-01 | 71.4% | 100.0% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 39.0 | 3.25e-01 | 71.4% | 49.6% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 41.0 | 3.41e-01 | 81.4% | 69.9% |
| 3noyB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.51 | 36.0 | 3.35e-01 | 75.7% | 89.5% |
| 4mchA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 38.0 | 2.70e-01 | 82.9% | 68.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.94 | 64.0 | 7.58e-01 | 70.0% | 98.0% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.74 | 49.0 | 5.37e-01 | 77.1% | 85.7% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.72 | 46.0 | 5.15e-01 | 75.7% | 85.2% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.70 | 47.0 | 5.34e-01 | 71.4% | 96.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.69 | 44.0 | 5.12e-01 | 71.4% | 100.0% |
| 5011082 | 2006.1.6.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 | 0.58 | 43.0 | 3.18e-01 | 82.9% | 38.5% |
| 3516794 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 37.0 | 3.05e-01 | 72.9% | 41.4% |
| 5025538 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.54 | 38.0 | 3.39e-01 | 72.9% | 66.3% |
| 3513933 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.54 | 37.0 | 3.10e-01 | 72.9% | 42.3% |
| 3973735 | 2002.1.1.112 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_114 | 0.53 | 43.0 | 2.95e-01 | 92.9% | 24.4% |
| 3509348 | 214.1.1.15 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 | 0.53 | 41.0 | 2.79e-01 | 88.6% | 74.0% |
| 4134192 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.52 | 31.0 | 2.64e-01 | 77.1% | 34.2% |
| 3508119 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.52 | 36.0 | 3.07e-01 | 72.9% | 45.8% |
| 3496452 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 34.0 | 2.57e-01 | 70.0% | 73.3% |
| 3517867 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.50 | 38.0 | 3.19e-01 | 84.3% | 49.2% |
D2
medium
residues 195-236
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 55.0 | 4.11e-01 | 81.0% | 52.4% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.71 | 53.0 | 3.10e-01 | 78.6% | 15.3% |
| 3jx9A00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.66 | 58.0 | 3.82e-01 | 97.6% | 100.0% |
| 2b69A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 49.0 | 3.11e-01 | 83.3% | 31.5% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.66 | 53.0 | 3.55e-01 | 90.5% | 89.7% |
| 3q91B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.64 | 47.0 | 3.39e-01 | 83.3% | 83.2% |
| 6qigA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.62 | 45.0 | 2.94e-01 | 78.6% | 17.3% |
| 6ysiH01 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.58 | 40.0 | 3.46e-01 | 73.8% | 97.3% |
| 3hbxA01 | 4.10.280.50 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › | 0.51 | 38.0 | 3.60e-01 | 85.7% | 74.1% |
| 4uhvA03 | 4.10.220.110 | Few Secondary Structures › Irregular › Light-harvesting Protein › | 0.51 | 38.0 | 3.47e-01 | 88.1% | 85.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2088104 | 4166.1.1.1 ↗ | beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › T6SS_VasE | 0.75 | 56.0 | 3.63e-01 | 83.3% | 18.3% |
| 3178571 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.74 | 57.0 | 3.73e-01 | 83.3% | 88.0% |
| 3471797 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.73 | 63.0 | 3.57e-01 | 92.9% | 10.1% |
| 3975357 | 1083.1.1.3 ↗ | a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage_fiber_2 | 0.70 | 50.0 | 5.08e-01 | 76.2% | 97.5% |
| 4887993 | 139.3.1.1 ↗ | few secondary structure elements › Multiheme cytochromes › Photosynthetic reaction centre (cytochrome subunit) › Photosynthetic reaction centre (cytochrome subunit) › CytoC_RC | 0.64 | 50.0 | 2.97e-01 | 85.7% | 12.3% |
| 3198188 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.63 | 45.0 | 2.66e-01 | 76.2% | 19.0% |
| 3908864 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.60 | 46.0 | 3.05e-01 | 88.1% | 64.9% |