←Back to structures
As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00094
Bact-VirAs_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00094
Identity
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-78
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.71 | 58.0 | 5.14e-01 | 91.2% | 82.1% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.70 | 39.0 | 3.50e-01 | 73.7% | 39.2% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.69 | 49.0 | 4.51e-01 | 73.7% | 63.4% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.68 | 48.0 | 4.03e-01 | 75.4% | 61.9% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.67 | 53.0 | 4.17e-01 | 87.7% | 46.7% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 48.0 | 4.81e-01 | 89.5% | 77.6% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 40.0 | 2.98e-01 | 73.7% | 26.3% |
| 3u9sE04 | 3.30.700.40 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.63 | 38.0 | 2.98e-01 | 77.2% | 28.0% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.62 | 42.0 | 2.94e-01 | 70.2% | 30.6% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 45.0 | 2.83e-01 | 78.9% | 16.7% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 38.0 | 4.26e-01 | 75.4% | 89.7% |
| 2l5lA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 52.0 | 3.94e-01 | 96.5% | 71.3% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.61 | 47.0 | 3.34e-01 | 84.2% | 49.1% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.60 | 49.0 | 4.52e-01 | 91.2% | 72.0% |
| 4l1mB00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.60 | 43.0 | 2.69e-01 | 78.9% | 21.3% |
| 2gwcA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.60 | 51.0 | 3.05e-01 | 98.2% | 51.1% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 41.0 | 3.65e-01 | 91.2% | 48.3% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 46.0 | 3.87e-01 | 87.7% | 54.7% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 40.0 | 3.64e-01 | 89.5% | 56.2% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 52.0 | 3.26e-01 | 100.0% | 72.2% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.58 | 41.0 | 4.10e-01 | 87.7% | 75.9% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 44.0 | 2.79e-01 | 87.7% | 25.5% |
| 4p79A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.57 | 50.0 | 3.51e-01 | 100.0% | 63.5% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.56 | 47.0 | 4.00e-01 | 100.0% | 55.3% |
| 1aroP05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.56 | 45.0 | 3.09e-01 | 91.2% | 38.3% |
| 3cobC00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.56 | 47.0 | 2.94e-01 | 96.5% | 33.5% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 42.0 | 3.54e-01 | 89.5% | 94.6% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.55 | 45.0 | 3.50e-01 | 100.0% | 45.9% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 43.0 | 3.49e-01 | 87.7% | 81.8% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 35.0 | 3.44e-01 | 80.7% | 60.3% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.22e-01 | 75.4% | 56.6% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.53 | 42.0 | 3.05e-01 | 87.7% | 62.0% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.52 | 42.0 | 3.64e-01 | 89.5% | 86.5% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 3.01e-01 | 89.5% | 80.9% |
| 2bwnB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 2.74e-01 | 77.2% | 62.9% |
| 2q0lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 46.0 | 3.16e-01 | 100.0% | 30.5% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3773509 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 53.0 | 5.29e-01 | 100.0% | 81.7% |
| 5079107 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 54.0 | 4.14e-01 | 89.5% | 60.0% |
| 3455792 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.66 | 48.0 | 3.02e-01 | 78.9% | 28.6% |
| 4029346 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.65 | 56.0 | 4.65e-01 | 96.5% | 86.0% |
| 4280539 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.65 | 48.0 | 2.66e-01 | 78.9% | 8.9% |
| 3403184 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.64 | 51.0 | 4.21e-01 | 86.0% | 87.0% |
| 5050929 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.64 | 43.0 | 3.96e-01 | 70.2% | 62.7% |
| 4955569 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.64 | 44.0 | 3.05e-01 | 98.2% | 23.4% |
| 4030804 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.64 | 49.0 | 3.16e-01 | 96.5% | 16.9% |
| 5013223 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.63 | 50.0 | 3.39e-01 | 87.7% | 41.0% |
| 3876027 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.63 | 49.0 | 3.63e-01 | 100.0% | 32.0% |
| 3952995 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.63 | 44.0 | 3.84e-01 | 73.7% | 70.6% |
| 3519816 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.63 | 42.0 | 2.79e-01 | 94.7% | 16.7% |
| 4398495 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.62 | 48.0 | 2.71e-01 | 86.0% | 9.7% |
| 2507513 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.62 | 43.0 | 2.93e-01 | 73.7% | 36.5% |
| 3242234 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.61 | 48.0 | 2.75e-01 | 84.2% | 25.6% |
| 4590279 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.61 | 49.0 | 3.05e-01 | 87.7% | 63.5% |
| 3784980 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.61 | 48.0 | 3.95e-01 | 86.0% | 81.9% |
| 4650117 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.61 | 50.0 | 4.48e-01 | 91.2% | 67.5% |
| 3947601 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.60 | 41.0 | 2.60e-01 | 71.9% | 29.8% |
| 5075725 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 47.0 | 3.60e-01 | 89.5% | 58.6% |
| 4888761 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 48.0 | 3.41e-01 | 93.0% | 38.4% |
| 3640588 | 6043.2.1.0 ↗ | a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain | 0.59 | 40.0 | 3.25e-01 | 70.2% | 62.3% |
| 5045224 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 39.0 | 3.47e-01 | 70.2% | 75.3% |
| 4981192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 51.0 | 3.35e-01 | 100.0% | 69.4% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.58 | 53.0 | 3.02e-01 | 100.0% | 18.3% |
| 5075524 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.58 | 48.0 | 3.24e-01 | 100.0% | 26.2% |
| 4533523 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.57 | 37.0 | 3.59e-01 | 75.4% | 58.5% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.57 | 51.0 | 3.13e-01 | 100.0% | 82.9% |
| 3940660 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.57 | 47.0 | 2.72e-01 | 94.7% | 21.6% |
| 4014861 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 44.0 | 2.93e-01 | 86.0% | 24.9% |
| 3209304 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.57 | 38.0 | 3.44e-01 | 84.2% | 47.6% |
| 4983508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.08e-01 | 84.2% | 100.0% |
| 4019781 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 39.0 | 2.60e-01 | 73.7% | 20.8% |
| 3699192 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.56 | 44.0 | 2.90e-01 | 89.5% | 53.2% |
| 3854926 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.56 | 39.0 | 2.44e-01 | 77.2% | 34.6% |
| 3706884 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 47.0 | 3.78e-01 | 93.0% | 87.3% |
| 4963072 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.56 | 51.0 | 2.98e-01 | 100.0% | 30.9% |
| 3774338 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.56 | 50.0 | 4.01e-01 | 100.0% | 87.3% |
| 4527859 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 46.0 | 4.13e-01 | 93.0% | 90.0% |
| 3470252 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.55 | 47.0 | 3.78e-01 | 93.0% | 97.3% |
| 4646626 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.55 | 35.0 | 3.42e-01 | 75.4% | 56.9% |
| 4322675 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.55 | 48.0 | 3.84e-01 | 96.5% | 84.5% |
| 3957591 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 40.0 | 2.69e-01 | 86.0% | 70.6% |
| 4683204 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.54 | 48.0 | 3.93e-01 | 100.0% | 55.2% |
| 2309 | 4161.1.1.2 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N | 0.53 | 45.0 | 3.50e-01 | 96.5% | 49.2% |
| 3786015 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.53 | 46.0 | 2.57e-01 | 98.2% | 7.9% |
| 4930437 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.53 | 46.0 | 3.69e-01 | 94.7% | 81.0% |
| 3516559 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 46.0 | 3.29e-01 | 100.0% | 62.5% |
| 3743466 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.51 | 39.0 | 3.18e-01 | 82.5% | 58.1% |