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As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00105

Bact-Vir

As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00105

Identity

Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-96
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 32.0 3.71e-01 100.0% 64.2%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 49.0 3.53e-01 100.0% 28.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.42e-01 73.9% 88.9%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 33.0 3.83e-01 75.0% 82.5%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 36.0 3.17e-01 72.8% 41.1%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 43.0 3.05e-01 80.4% 37.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 45.0 3.89e-01 90.2% 94.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.54 37.0 3.23e-01 71.7% 53.6%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.53 43.0 4.07e-01 100.0% 72.6%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 37.0 2.87e-01 76.1% 33.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.68e-01 100.0% 83.6%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 29.0 3.52e-01 71.7% 86.4%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.51e-01 94.6% 67.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 32.0 4.25e-01 100.0% 95.6%
3617446 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 48.0 4.60e-01 100.0% 70.5%
3582030 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.55 47.0 3.33e-01 100.0% 28.7%
3189668 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.55 45.0 4.17e-01 97.8% 69.6%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 2.34e-01 77.2% 8.7%
4479020 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.53 36.0 3.73e-01 92.4% 72.9%
3457734 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 46.0 3.86e-01 100.0% 57.1%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.51 39.0 3.88e-01 100.0% 77.0%
3415831 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.51 40.0 3.70e-01 100.0% 65.8%
3506641 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.72e-01 75.0% 95.3%