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As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00230
Bact-VirAs_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00230
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-194
Domain cluster:
rep: MF356679.1__ASR76345.1__D6_42__00042__D3-153
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nraC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 55.0 | 6.00e-01 | 81.2% | 94.0% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.52 | 26.0 | 3.27e-01 | 98.9% | 78.1% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 22.0 | 2.87e-01 | 91.7% | 69.1% |
| 4hoiB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 24.0 | 2.88e-01 | 85.6% | 65.8% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 22.0 | 2.83e-01 | 79.6% | 66.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986771 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.79 | 52.0 | 6.11e-01 | 76.2% | 93.1% |
| 5082315 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.78 | 53.0 | 6.14e-01 | 75.7% | 94.6% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.73 | 18.0 | 3.03e-01 | 92.3% | 55.7% |
| 4379249 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.53 | 29.0 | 3.40e-01 | 70.2% | 74.4% |
| 3275020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 20.0 | 3.20e-01 | 82.3% | 93.8% |
| 4640695 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.52 | 22.0 | 2.79e-01 | 90.6% | 62.9% |
| 3907395 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.51 | 26.0 | 3.37e-01 | 74.0% | 87.0% |
| 3405285 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.51 | 20.0 | 3.02e-01 | 70.2% | 83.7% |
D2
medium
residues 195-266
Domain cluster:
representative
CATH (55)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 75.0 | 6.85e-01 | 97.2% | 73.6% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 73.0 | 6.47e-01 | 98.6% | 77.5% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.67 | 53.0 | 4.62e-01 | 100.0% | 55.4% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 47.0 | 4.13e-01 | 94.4% | 50.0% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.65 | 53.0 | 4.64e-01 | 100.0% | 60.2% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.63 | 46.0 | 3.34e-01 | 97.2% | 26.4% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 3.90e-01 | 95.8% | 51.0% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.61 | 44.0 | 3.35e-01 | 95.8% | 30.9% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 47.0 | 4.31e-01 | 100.0% | 62.9% |
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.61 | 47.0 | 3.14e-01 | 84.7% | 39.7% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 54.0 | 3.93e-01 | 100.0% | 47.0% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 45.0 | 3.03e-01 | 83.3% | 37.8% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 50.0 | 4.81e-01 | 94.4% | 95.2% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.59 | 47.0 | 4.29e-01 | 88.9% | 92.0% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.59 | 46.0 | 4.57e-01 | 87.5% | 96.2% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.59 | 52.0 | 3.86e-01 | 97.2% | 70.2% |
| 4c2mA09 | 3.30.70.2850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 3.89e-01 | 100.0% | 77.6% |
| 3zlaD01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.58 | 40.0 | 3.34e-01 | 72.2% | 71.4% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 45.0 | 3.82e-01 | 100.0% | 50.4% |
| 3og5A01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 47.0 | 4.55e-01 | 93.1% | 92.9% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.40e-01 | 100.0% | 73.9% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 46.0 | 4.50e-01 | 91.7% | 97.6% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.58 | 40.0 | 3.71e-01 | 100.0% | 55.8% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.57 | 36.0 | 3.75e-01 | 93.1% | 68.7% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 4.21e-01 | 100.0% | 65.0% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.92e-01 | 100.0% | 59.4% |
| 3eehA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 51.0 | 4.28e-01 | 97.2% | 87.9% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 43.0 | 4.30e-01 | 86.1% | 98.7% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.50e-01 | 100.0% | 50.5% |
| 1vkwA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 41.0 | 3.49e-01 | 94.4% | 46.3% |
| 5hwtB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 47.0 | 4.06e-01 | 97.2% | 91.8% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 47.0 | 4.56e-01 | 95.8% | 96.4% |
| 4k3bA04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 44.0 | 4.32e-01 | 88.9% | 97.4% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.50e-01 | 98.6% | 84.8% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 50.0 | 4.05e-01 | 98.6% | 57.3% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 49.0 | 3.23e-01 | 100.0% | 25.0% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 46.0 | 4.02e-01 | 100.0% | 60.0% |
| 3ewkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 50.0 | 4.39e-01 | 98.6% | 98.1% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.55 | 41.0 | 3.41e-01 | 100.0% | 43.1% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 42.0 | 3.97e-01 | 100.0% | 69.3% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.67e-01 | 100.0% | 55.0% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 44.0 | 2.93e-01 | 91.7% | 92.8% |
| 4wy5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 46.0 | 3.06e-01 | 97.2% | 75.3% |
| 4v19R01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.54 | 43.0 | 3.80e-01 | 90.3% | 81.2% |
| 1gd8A00 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.54 | 43.0 | 3.87e-01 | 90.3% | 83.8% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 48.0 | 4.05e-01 | 100.0% | 86.6% |
| 3o3uN03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.56e-01 | 100.0% | 54.1% |
| 3mtiB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.43e-01 | 97.2% | 95.6% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.50e-01 | 100.0% | 52.7% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.78e-01 | 100.0% | 69.3% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 41.0 | 3.01e-01 | 91.7% | 93.8% |
| 4bs9A03 | 3.30.1330.230 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.52 | 44.0 | 3.56e-01 | 97.2% | 61.4% |
| 2o61A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.84e-01 | 97.2% | 74.5% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.43e-01 | 100.0% | 52.6% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 45.0 | 3.87e-01 | 97.2% | 73.7% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3036035 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.86 | 75.0 | 6.50e-01 | 97.2% | 63.8% |
| 4607326 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.69 | 51.0 | 4.51e-01 | 100.0% | 54.3% |
| 4965445 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.66 | 48.0 | 3.68e-01 | 77.8% | 76.4% |
| 4929428 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.65 | 49.0 | 4.68e-01 | 100.0% | 69.4% |
| 4983809 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.65 | 46.0 | 4.52e-01 | 100.0% | 68.8% |
| 3614118 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 57.0 | 3.41e-01 | 100.0% | 60.7% |
| 4025670 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.65 | 59.0 | 4.92e-01 | 100.0% | 92.5% |
| 4862964 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.64 | 48.0 | 3.58e-01 | 80.6% | 33.2% |
| 4591683 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.64 | 48.0 | 4.45e-01 | 100.0% | 62.1% |
| 4998402 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 45.0 | 4.15e-01 | 94.4% | 56.8% |
| 3593152 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.64 | 47.0 | 2.92e-01 | 79.2% | 32.5% |
| 3498546 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.63 | 44.0 | 4.44e-01 | 100.0% | 70.7% |
| 4503821 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.63 | 47.0 | 4.83e-01 | 100.0% | 84.3% |
| 5082567 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.63 | 45.0 | 3.39e-01 | 95.8% | 28.9% |
| 3578350 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.62 | 43.0 | 2.75e-01 | 72.2% | 17.0% |
| 4541918 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.62 | 51.0 | 4.95e-01 | 90.3% | 96.2% |
| 3513861 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.62 | 43.0 | 4.22e-01 | 100.0% | 66.3% |
| 3518340 | 2004.1.3.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR,EKR | 0.62 | 44.0 | 3.08e-01 | 97.2% | 22.0% |
| 3931669 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.61 | 51.0 | 4.09e-01 | 100.0% | 45.3% |
| 4899007 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.61 | 43.0 | 4.34e-01 | 83.3% | 75.0% |
| 4943826 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.60 | 45.0 | 3.46e-01 | 97.2% | 33.0% |
| 2547933 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.60 | 49.0 | 4.68e-01 | 91.7% | 91.8% |
| 5062595 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.59 | 46.0 | 3.16e-01 | 97.2% | 23.5% |
| 3565365 | 5054.1.1.110 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Pecanex_C | 0.59 | 48.0 | 3.49e-01 | 94.4% | 99.6% |
| 4459240 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.59 | 47.0 | 4.58e-01 | 90.3% | 97.5% |
| 1172545 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.59 | 46.0 | 4.14e-01 | 100.0% | 60.8% |
| 4229467 | 331.9.1.7 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP5B1_C | 0.58 | 47.0 | 4.07e-01 | 94.4% | 55.7% |
| 3476800 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 50.0 | 4.31e-01 | 98.6% | 82.5% |
| 3295391 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.58 | 44.0 | 2.90e-01 | 84.7% | 47.3% |
| 3839154 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.58 | 48.0 | 4.56e-01 | 93.1% | 95.3% |
| 3404546 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.58 | 46.0 | 3.72e-01 | 90.3% | 74.0% |
| 3387643 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.57 | 45.0 | 4.45e-01 | 88.9% | 98.8% |
| 5052583 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 42.0 | 3.83e-01 | 100.0% | 56.2% |
| 4673175 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.57 | 46.0 | 4.48e-01 | 90.3% | 97.5% |
| 3287602 | 886.1.1.3 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Cass2 | 0.57 | 41.0 | 3.39e-01 | 94.4% | 38.9% |
| 4980673 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 49.0 | 4.34e-01 | 98.6% | 97.3% |
| 5043596 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.57 | 46.0 | 4.05e-01 | 100.0% | 58.3% |
| 3624599 | 304.166.1.9 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 | 0.56 | 44.0 | 3.77e-01 | 98.6% | 51.7% |
| 2035759 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.56 | 38.0 | 4.14e-01 | 88.9% | 87.9% |
| 4395482 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.56 | 46.0 | 2.89e-01 | 90.3% | 24.1% |
| 3946660 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.56 | 42.0 | 3.66e-01 | 100.0% | 50.0% |
| 3471847 | 304.28.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SGT1 | 0.56 | 45.0 | 3.47e-01 | 100.0% | 37.7% |
| 3710119 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 44.0 | 2.94e-01 | 91.7% | 59.5% |
| 4160593 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.56 | 46.0 | 3.55e-01 | 91.7% | 41.2% |
| 3601392 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.55 | 49.0 | 3.75e-01 | 100.0% | 45.3% |
| 3471357 | 304.133.1.0 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein | 0.55 | 44.0 | 3.87e-01 | 100.0% | 55.8% |
| 4348096 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.55 | 46.0 | 3.55e-01 | 93.1% | 41.2% |
| 3837975 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 41.0 | 3.15e-01 | 79.2% | 43.6% |
| 5528 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.55 | 41.0 | 3.41e-01 | 100.0% | 43.1% |
| 170705 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.55 | 50.0 | 4.38e-01 | 100.0% | 99.0% |
| 5036327 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 35.0 | 3.63e-01 | 91.7% | 70.8% |
| 4043605 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.54 | 36.0 | 3.49e-01 | 100.0% | 58.8% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.54 | 45.0 | 3.86e-01 | 100.0% | 56.7% |
| None | — | 0.53 | 44.0 | 3.37e-01 | 95.8% | 96.3% | |
| 3808918 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.53 | 38.0 | 4.19e-01 | 94.4% | 91.7% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.52 | 42.0 | 3.00e-01 | 88.9% | 91.1% |
| 3286654 | 223.1.1.37 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N | 0.52 | 46.0 | 4.13e-01 | 97.2% | 93.0% |
| 3220393 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.52 | 44.0 | 3.73e-01 | 100.0% | 78.5% |
| 4255094 | 304.28.1.35 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless | 0.52 | 45.0 | 3.94e-01 | 100.0% | 64.5% |
| 3963401 | 2484.1.1.61 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 | 0.52 | 40.0 | 3.05e-01 | 98.6% | 33.9% |
| 3904790 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.73e-01 | 100.0% | 70.6% |
| 3627039 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.51 | 42.0 | 3.09e-01 | 100.0% | 85.2% |
| 3282498 | 223.1.1.37 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N | 0.51 | 44.0 | 4.01e-01 | 97.2% | 92.6% |
D3
medium
residues 267-396
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3crdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 32.0 | 3.57e-01 | 79.2% | 82.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578072 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.52 | 33.0 | 3.68e-01 | 88.5% | 82.0% |
| 3277844 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 37.0 | 3.25e-01 | 76.2% | 84.1% |