←Back to structures
As_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00268
Bact-VirAs_gut_js4906-26-3_S26_scaffold_18_curated_prodigal-single.1__X__X__00268
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-79_369-449
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.56 | 38.0 | 4.00e-01 | 73.7% | 76.3% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 50.0 | 4.43e-01 | 100.0% | 80.1% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 39.0 | 3.98e-01 | 76.3% | 76.5% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.53 | 40.0 | 4.30e-01 | 100.0% | 96.0% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 36.0 | 3.76e-01 | 74.3% | 77.7% |
| 4iuwA02 | 1.10.1380.10 | Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 | 0.50 | 40.0 | 3.14e-01 | 84.9% | 74.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3859646 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.53 | 37.0 | 2.53e-01 | 73.0% | 84.6% |
| 3514792 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.51 | 46.0 | 3.61e-01 | 100.0% | 85.3% |
| 3466405 | 1075.1.2.12 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70 | 0.51 | 38.0 | 3.73e-01 | 78.9% | 78.8% |
D2
medium
residues 80-218_342-368
Domain cluster:
rep: KX077896.1__ANM47701.1__X__00070__D117-246_318-381
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13546.13 best | DDE_5 | 36.4 | 5.90e-09 | 90.4% | 52.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cr4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 51.0 | 4.56e-01 | 89.2% | 71.9% |
| 3ttcA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 37.0 | 4.16e-01 | 91.0% | 88.4% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.55 | 36.0 | 4.09e-01 | 77.7% | 85.8% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 27.0 | 3.43e-01 | 93.4% | 87.9% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 25.0 | 3.28e-01 | 86.7% | 82.1% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 30.0 | 3.55e-01 | 75.3% | 85.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082324 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.79 | 76.0 | 5.89e-01 | 100.0% | 70.6% |
| 3938530 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.59 | 50.0 | 4.52e-01 | 89.8% | 73.8% |
| 3917312 | 2484.1.1.104 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 | 0.58 | 49.0 | 3.13e-01 | 89.2% | 23.7% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.58 | 42.0 | 3.19e-01 | 74.1% | 80.0% |
| 3452171 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.55 | 42.0 | 3.83e-01 | 80.7% | 88.9% |
| 3679206 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 42.0 | 3.08e-01 | 81.9% | 47.2% |
| 3741194 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 44.0 | 3.27e-01 | 90.4% | 58.3% |
| 3606266 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 35.0 | 2.50e-01 | 71.7% | 49.9% |
D3
medium
residues 219-341
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 39.0 | 3.93e-01 | 100.0% | 63.7% |
| 3lifA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 35.0 | 3.96e-01 | 74.0% | 85.6% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.54 | 34.0 | 3.56e-01 | 74.0% | 66.4% |
| 3bwlB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 38.0 | 3.82e-01 | 71.5% | 80.5% |
| 2r78C00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 37.0 | 3.82e-01 | 70.7% | 82.8% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 38.0 | 4.09e-01 | 74.0% | 99.0% |
| 4f3lB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.74e-01 | 74.8% | 82.9% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 36.0 | 3.77e-01 | 70.7% | 85.6% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 36.0 | 3.75e-01 | 71.5% | 86.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 45.0 | 3.63e-01 | 95.9% | 94.6% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 45.0 | 3.51e-01 | 99.2% | 89.2% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 34.0 | 3.60e-01 | 70.7% | 86.8% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 4.00e-01 | 92.7% | 86.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4149684 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.70 | 46.0 | 3.54e-01 | 100.0% | 30.7% |
| 5061579 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 50.0 | 3.53e-01 | 100.0% | 30.8% |
| 4957055 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.58 | 36.0 | 4.35e-01 | 74.0% | 100.0% |
| 3723734 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.56 | 41.0 | 3.75e-01 | 76.4% | 74.4% |
| 5063921 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 39.0 | 4.13e-01 | 74.0% | 92.7% |
| 5019275 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 39.0 | 4.02e-01 | 73.2% | 88.7% |
| 5063920 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.54 | 39.0 | 4.01e-01 | 74.0% | 87.8% |
| 4009646 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.54 | 42.0 | 3.21e-01 | 82.9% | 98.0% |
| 4938363 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 38.0 | 3.70e-01 | 72.4% | 72.6% |
| 4943044 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.54 | 38.0 | 3.97e-01 | 72.4% | 90.0% |
| 4944433 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.53 | 39.0 | 4.02e-01 | 76.4% | 91.3% |
| 3599881 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 42.0 | 4.02e-01 | 100.0% | 73.1% |
| 3683009 | 708.1.1.17 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF29201 | 0.53 | 36.0 | 4.00e-01 | 74.8% | 89.5% |
| 4999863 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 38.0 | 2.74e-01 | 74.0% | 31.9% |
| 3927984 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.81e-01 | 73.2% | 79.2% |
| 3520333 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.52 | 34.0 | 3.59e-01 | 74.8% | 71.9% |
| 5021203 | 223.1.1.96 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_2 | 0.52 | 38.0 | 3.71e-01 | 75.6% | 68.9% |
| 1271814 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 36.0 | 3.56e-01 | 71.5% | 72.3% |
| 5030147 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 41.0 | 3.93e-01 | 97.6% | 71.7% |
| 5003155 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 38.0 | 3.28e-01 | 74.8% | 55.7% |
| 4169890 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.52 | 42.0 | 2.76e-01 | 86.2% | 85.0% |
| 3474293 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.55e-01 | 100.0% | 62.7% |
| 3765955 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.51 | 39.0 | 2.63e-01 | 79.7% | 55.9% |
| 3472961 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.59e-01 | 99.2% | 64.7% |
| 3591665 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 37.0 | 3.30e-01 | 95.9% | 54.7% |
| 3593291 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 39.0 | 3.71e-01 | 100.0% | 69.7% |
| 3953609 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 33.0 | 3.41e-01 | 96.7% | 69.6% |
| 3258498 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.50 | 36.0 | 3.22e-01 | 75.6% | 58.3% |