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Ati_or_CPXV158_protein
Euk-VirCowpox_virus
Ati_or_CPXV158_protein__NP_619942__Cowpox_virus__10243
Identity
- Accession:
- NP_619942 ↗
- Protein ID:
- Ati_or_CPXV158_protein
- Kingdom:
- euk
Quality
65.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Orthopoxvirus›
Cowpox_virus
TaxID: 10243
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-118
Domain cluster:
rep: MC130L__NP_044081__Molluscum_contagiosum_virus_subtype_1__10280__D3-150
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06086.19 best | Pox_A30L_A26L | 46.9 | 3.80e-12 | 85.6% | 54.9% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z9eA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.68 | 45.0 | 5.19e-01 | 94.1% | 96.4% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.65 | 42.0 | 4.99e-01 | 80.5% | 98.7% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 38.0 | 4.13e-01 | 99.2% | 72.2% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 43.0 | 4.27e-01 | 88.1% | 68.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 36.0 | 4.12e-01 | 85.6% | 81.2% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 50.0 | 4.01e-01 | 89.0% | 66.5% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 47.0 | 4.92e-01 | 96.6% | 91.7% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 46.0 | 4.40e-01 | 80.5% | 73.5% |
| 4tpjA00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 52.0 | 3.58e-01 | 100.0% | 84.7% |
| 4i9cA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 40.0 | 3.25e-01 | 100.0% | 36.2% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.59 | 37.0 | 3.67e-01 | 94.9% | 59.3% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 4.59e-01 | 83.1% | 98.4% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 45.0 | 4.82e-01 | 82.2% | 95.1% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 51.0 | 4.96e-01 | 98.3% | 93.3% |
| 3p4tA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.58 | 39.0 | 3.56e-01 | 95.8% | 53.3% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.57 | 42.0 | 2.90e-01 | 77.1% | 44.3% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.57 | 45.0 | 4.34e-01 | 89.8% | 73.7% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 47.0 | 4.69e-01 | 97.5% | 86.2% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 47.0 | 4.65e-01 | 97.5% | 85.8% |
| 1ya0A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 49.0 | 4.12e-01 | 97.5% | 69.4% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 4.71e-01 | 84.7% | 98.1% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 47.0 | 4.00e-01 | 94.1% | 57.1% |
| 3zojA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.54 | 47.0 | 3.74e-01 | 100.0% | 78.7% |
| 2x64A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 43.0 | 4.46e-01 | 97.5% | 92.0% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.96e-01 | 94.9% | 68.9% |
| 5b7cA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 44.0 | 4.55e-01 | 97.5% | 95.5% |
| 6igxD01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 49.0 | 3.76e-01 | 100.0% | 60.3% |
| 5gj7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 37.0 | 3.43e-01 | 95.8% | 55.6% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 36.0 | 3.87e-01 | 94.9% | 81.0% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.53 | 43.0 | 3.61e-01 | 87.3% | 87.4% |
| 1fntc01 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.53 | 45.0 | 3.86e-01 | 93.2% | 74.5% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.52 | 44.0 | 3.87e-01 | 89.8% | 87.8% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.52 | 33.0 | 3.33e-01 | 94.1% | 62.9% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.52 | 34.0 | 3.11e-01 | 99.2% | 47.6% |
| 3gehA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.52 | 43.0 | 3.82e-01 | 89.8% | 73.1% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 38.0 | 3.86e-01 | 78.0% | 84.9% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 42.0 | 3.81e-01 | 89.8% | 65.1% |
| 3ez0C00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 44.0 | 3.72e-01 | 96.6% | 86.1% |
| 8ex5A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 41.0 | 3.53e-01 | 86.4% | 55.0% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 4.11e-01 | 94.9% | 79.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2439589 | 109.4.1.1127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_Cnot1 | 0.70 | 57.0 | 4.69e-01 | 97.5% | 49.0% |
| 4976933 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.65 | 38.0 | 3.61e-01 | 71.2% | 49.6% |
| 4998508 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 48.0 | 4.07e-01 | 97.5% | 47.9% |
| 3338006 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.64 | 39.0 | 3.90e-01 | 87.3% | 59.2% |
| 3906599 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 46.0 | 4.65e-01 | 98.3% | 75.7% |
| 3237210 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 56.0 | 4.61e-01 | 98.3% | 78.6% |
| 4012037 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 45.0 | 3.89e-01 | 73.7% | 78.9% |
| 3942411 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.62 | 52.0 | 4.25e-01 | 89.0% | 83.8% |
| 4017863 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 4.88e-01 | 86.4% | 89.2% |
| 3719665 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 5.02e-01 | 95.8% | 93.3% |
| 3576126 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.60 | 52.0 | 5.13e-01 | 97.5% | 88.8% |
| 3797233 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.60 | 54.0 | 4.67e-01 | 99.2% | 96.7% |
| 5016489 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.58 | 49.0 | 4.14e-01 | 91.5% | 92.5% |
| 4942860 | 604.12.1.136 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vut_1 | 0.57 | 52.0 | 4.24e-01 | 100.0% | 63.7% |
| 3758500 | 109.4.1.87 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 | 0.57 | 51.0 | 3.16e-01 | 99.2% | 25.5% |
| 3206884 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.57 | 48.0 | 3.88e-01 | 97.5% | 46.8% |
| 3296508 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.57 | 35.0 | 3.48e-01 | 87.3% | 57.7% |
| 3445194 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.56 | 50.0 | 3.35e-01 | 100.0% | 63.3% |
| 3596083 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 50.0 | 4.68e-01 | 95.8% | 92.1% |
| 4341152 | 109.4.1.269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3 | 0.55 | 49.0 | 3.88e-01 | 99.2% | 62.0% |
| 3831410 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.55 | 49.0 | 4.77e-01 | 97.5% | 88.5% |
| 3713380 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.62e-01 | 99.2% | 41.1% |
| 4002239 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 48.0 | 3.20e-01 | 100.0% | 37.2% |
| 3408116 | 109.4.1.875 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_1st | 0.54 | 48.0 | 4.06e-01 | 100.0% | 62.5% |
| 3580281 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 41.0 | 4.38e-01 | 89.0% | 92.4% |
| 4681455 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 47.0 | 4.44e-01 | 99.2% | 84.1% |
| 3267148 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.53 | 41.0 | 4.30e-01 | 100.0% | 89.1% |
| 3373701 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.52 | 44.0 | 2.95e-01 | 95.8% | 22.7% |
| 3736252 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.51 | 45.0 | 3.00e-01 | 98.3% | 78.8% |
| 5009989 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.51 | 42.0 | 3.40e-01 | 89.8% | 53.0% |
| 4335847 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.50 | 41.0 | 3.70e-01 | 89.8% | 72.4% |
D2
medium
residues 119-202
D3
medium
residues 203-337
Domain cluster:
rep: A-type_inclusion_protein__YP_009046421__Pigeonpox_virus__10264__D227-336
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oy7E00 | 2.70.50.50 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 | 0.51 | 38.0 | 3.38e-01 | 75.6% | 94.4% |
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.51 | 27.0 | 3.11e-01 | 93.3% | 68.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988781 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.71e-01 | 73.3% | 97.4% |
| 3757469 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 33.0 | 3.96e-01 | 77.0% | 97.6% |
| 5019528 | 10.12.1.34 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI | 0.52 | 48.0 | 3.95e-01 | 100.0% | 68.8% |
| 5074129 | 10.12.1.34 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI | 0.52 | 47.0 | 3.91e-01 | 100.0% | 68.9% |
| 3846627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 33.0 | 3.75e-01 | 70.4% | 89.0% |
| 4408923 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.46e-01 | 73.3% | 80.6% |
D4
medium
residues 399-470
Domain cluster:
rep: HSPV146d__ABH08255__Horsepox_virus__397342__D396-458
D5
medium
residues 695-774
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04508.18 best | Pox_A_type_inc | 40.3 | 2.50e-10 | 28.7% | 100.0% |
| PF04508.18 | Pox_A_type_inc | 36.5 | 4.00e-09 | 26.2% | 91.3% |
| PF04508.18 | Pox_A_type_inc | 31.4 | 1.70e-07 | 25.0% | 87.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.93 | 72.0 | 7.46e-01 | 81.2% | 90.8% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.93 | 65.0 | 4.53e-01 | 72.5% | 27.0% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.89 | 79.0 | 6.40e-01 | 95.0% | 58.2% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.85 | 78.0 | 5.40e-01 | 100.0% | 44.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 54.0 | 5.63e-01 | 75.0% | 71.6% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.82 | 58.0 | 5.76e-01 | 78.8% | 71.1% |
| 1v9dB00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.80 | 61.0 | 3.99e-01 | 83.7% | 19.9% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.80 | 59.0 | 6.15e-01 | 77.5% | 82.7% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 55.0 | 5.21e-01 | 76.2% | 64.1% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.77 | 68.0 | 5.89e-01 | 100.0% | 83.2% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 71.0 | 4.97e-01 | 100.0% | 34.3% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 48.0 | 4.63e-01 | 72.5% | 58.4% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 50.0 | 4.35e-01 | 70.0% | 50.4% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 54.0 | 5.49e-01 | 77.5% | 82.1% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.73 | 61.0 | 4.25e-01 | 88.7% | 94.4% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 61.0 | 4.39e-01 | 100.0% | 31.4% |
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 65.0 | 4.83e-01 | 100.0% | 60.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.70 | 46.0 | 5.04e-01 | 70.0% | 88.5% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.69 | 53.0 | 4.44e-01 | 82.5% | 58.6% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.69 | 61.0 | 4.51e-01 | 100.0% | 41.3% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 43.0 | 3.95e-01 | 71.2% | 48.6% |
| 5mlc900 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.68 | 50.0 | 4.59e-01 | 78.8% | 90.7% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.67 | 47.0 | 4.02e-01 | 73.8% | 46.8% |
| 3rmgA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 47.0 | 3.16e-01 | 80.0% | 79.9% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3637046 | 192.8.1.327 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PigL_N | 0.95 | 70.0 | 6.16e-01 | 78.8% | 55.5% |
| 2055367 | 650.1.1.3 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA | 0.94 | 63.0 | 6.71e-01 | 71.2% | 78.6% |
| 4516566 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.92 | 87.0 | 6.37e-01 | 100.0% | 71.6% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.92 | 67.0 | 6.24e-01 | 75.0% | 63.2% |
| 3709492 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.92 | 75.0 | 6.36e-01 | 87.5% | 56.7% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.92 | 62.0 | 7.20e-01 | 70.0% | 93.3% |
| 3896686 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.91 | 69.0 | 6.32e-01 | 82.5% | 63.0% |
| 3823336 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.91 | 85.0 | 7.41e-01 | 100.0% | 69.6% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.91 | 68.0 | 6.68e-01 | 78.8% | 72.9% |
| 3545387 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.91 | 81.0 | 7.12e-01 | 96.2% | 68.2% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.91 | 68.0 | 6.87e-01 | 78.8% | 77.5% |
| 4645599 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.91 | 85.0 | 5.38e-01 | 100.0% | 38.3% |
| 3769667 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.90 | 68.0 | 6.12e-01 | 82.5% | 60.0% |
| 3880637 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.89 | 80.0 | 6.47e-01 | 100.0% | 54.3% |
| 3761938 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.88 | 79.0 | 6.24e-01 | 95.0% | 51.3% |
| 4086306 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 79.0 | 5.54e-01 | 100.0% | 33.8% |
| 3594129 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.88 | 82.0 | 5.84e-01 | 100.0% | 37.2% |
| 3175197 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.88 | 82.0 | 6.83e-01 | 100.0% | 61.5% |
| 4385616 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 82.0 | 7.00e-01 | 100.0% | 100.0% |
| 3629651 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.87 | 65.0 | 5.04e-01 | 80.0% | 38.7% |
| 3366153 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.85 | 77.0 | 5.96e-01 | 100.0% | 47.6% |
| 3470751 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.83 | 76.0 | 5.94e-01 | 100.0% | 49.4% |
| 3921802 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.83 | 76.0 | 5.92e-01 | 100.0% | 70.9% |
| 3562136 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.83 | 70.0 | 5.58e-01 | 100.0% | 47.1% |
| 3229095 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.83 | 71.0 | 6.54e-01 | 91.3% | 75.0% |
| 3410475 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.82 | 74.0 | 5.63e-01 | 100.0% | 54.6% |
| 5026453 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.82 | 67.0 | 5.44e-01 | 87.5% | 49.3% |
| 3174776 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.82 | 74.0 | 5.28e-01 | 100.0% | 45.8% |
| 3713201 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.81 | 67.0 | 5.34e-01 | 87.5% | 47.6% |
| 3313420 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.81 | 67.0 | 5.50e-01 | 92.5% | 50.7% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.81 | 68.0 | 6.00e-01 | 97.5% | 63.5% |
| 3972236 | 3755.3.1.42 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CheZ | 0.80 | 72.0 | 5.50e-01 | 100.0% | 49.4% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.80 | 73.0 | 5.25e-01 | 100.0% | 44.5% |
| 3414672 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.79 | 72.0 | 5.40e-01 | 100.0% | 92.1% |
| 3281127 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.79 | 66.0 | 6.36e-01 | 91.3% | 80.0% |
| 3858356 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.79 | 71.0 | 5.80e-01 | 100.0% | 54.5% |
| 5037413 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.79 | 70.0 | 5.36e-01 | 96.2% | 45.5% |
| 3567180 | 4177.1.1.61 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C | 0.78 | 72.0 | 5.03e-01 | 100.0% | 35.4% |
| 3456370 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.76 | 68.0 | 5.36e-01 | 96.2% | 51.0% |
| 3577907 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.75 | 66.0 | 4.69e-01 | 100.0% | 51.8% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.75 | 68.0 | 5.73e-01 | 100.0% | 63.8% |
| 3928340 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.74 | 68.0 | 5.10e-01 | 100.0% | 96.8% |
| 3719904 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.74 | 67.0 | 4.28e-01 | 100.0% | 84.6% |
| 4136919 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.74 | 67.0 | 5.07e-01 | 100.0% | 44.3% |
| 3886622 | 192.29.1.57 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ninjurin | 0.71 | 56.0 | 4.69e-01 | 86.3% | 50.4% |
| 4947298 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.70 | 57.0 | 4.92e-01 | 88.7% | 56.0% |
| 3600869 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.68 | 59.0 | 5.27e-01 | 98.8% | 70.4% |
| 4649114 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.67 | 59.0 | 5.55e-01 | 100.0% | 85.0% |
| 3858340 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.66 | 49.0 | 4.10e-01 | 85.0% | 45.0% |
| 3746549 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 48.0 | 4.21e-01 | 90.0% | 56.0% |
| 5057198 | 1073.1.1.0 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) | 0.59 | 44.0 | 3.81e-01 | 85.0% | 50.0% |
D6
medium
residues 853-920_939-966
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00470__D1165-1259
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02050.23 best | FliJ | 29.9 | 7.40e-07 | 100.0% | 65.3% |
| PF04508.18 | Pox_A_type_inc | 36.7 | 3.50e-09 | 24.0% | 95.7% |
| PF04508.18 | Pox_A_type_inc | 24.8 | 1.90e-05 | 22.9% | 87.0% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.81 | 56.0 | 5.42e-01 | 70.8% | 73.8% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 52.0 | 5.20e-01 | 70.8% | 70.7% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 65.0 | 4.53e-01 | 99.0% | 33.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 50.0 | 5.17e-01 | 71.9% | 76.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 54.0 | 5.97e-01 | 78.1% | 98.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 51.0 | 4.84e-01 | 74.0% | 68.2% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 52.0 | 5.71e-01 | 78.1% | 100.0% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.70 | 64.0 | 4.64e-01 | 100.0% | 45.0% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.69 | 61.0 | 4.40e-01 | 97.9% | 73.5% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 61.0 | 4.47e-01 | 100.0% | 65.8% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 56.0 | 4.28e-01 | 87.5% | 77.5% |
| 2v0oB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 57.0 | 4.14e-01 | 93.8% | 40.6% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.66 | 46.0 | 5.04e-01 | 71.9% | 94.8% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 47.0 | 4.68e-01 | 74.0% | 72.2% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.66 | 56.0 | 4.50e-01 | 92.7% | 52.7% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.65 | 46.0 | 4.11e-01 | 75.0% | 52.2% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 56.0 | 4.44e-01 | 97.9% | 48.6% |
| 4mrsA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.64 | 57.0 | 3.94e-01 | 100.0% | 33.0% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 57.0 | 4.88e-01 | 100.0% | 89.9% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.64 | 44.0 | 4.67e-01 | 100.0% | 80.0% |
| 3k29A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 55.0 | 4.74e-01 | 100.0% | 64.6% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 56.0 | 4.32e-01 | 99.0% | 74.4% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 4.70e-01 | 87.5% | 69.7% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 50.0 | 5.16e-01 | 87.5% | 100.0% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.62 | 55.0 | 3.69e-01 | 100.0% | 33.0% |
| 1dn1B00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 54.0 | 4.06e-01 | 93.8% | 55.0% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.62 | 54.0 | 4.82e-01 | 100.0% | 67.4% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 54.0 | 4.53e-01 | 100.0% | 59.5% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 46.0 | 4.07e-01 | 96.9% | 54.5% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 4.92e-01 | 87.5% | 98.6% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.59 | 46.0 | 4.73e-01 | 84.4% | 96.7% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.58 | 46.0 | 4.16e-01 | 85.4% | 62.4% |
| 3ofnY00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.57 | 50.0 | 4.75e-01 | 97.9% | 98.3% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.57 | 45.0 | 4.88e-01 | 83.3% | 100.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 41.0 | 4.48e-01 | 78.1% | 100.0% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 48.0 | 3.57e-01 | 100.0% | 49.6% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 40.0 | 4.22e-01 | 80.2% | 88.2% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983118 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.86 | 56.0 | 5.71e-01 | 70.8% | 67.4% |
| 4061849 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.83 | 58.0 | 5.48e-01 | 70.8% | 66.4% |
| 4543996 | 3600.1.1.1 ↗ | alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD | 0.82 | 57.0 | 5.52e-01 | 70.8% | 86.7% |
| 3229095 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.81 | 56.0 | 5.54e-01 | 70.8% | 75.0% |
| 4993050 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.81 | 56.0 | 4.24e-01 | 70.8% | 89.5% |
| 3940557 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.78 | 61.0 | 5.48e-01 | 83.3% | 67.7% |
| 3928077 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.77 | 53.0 | 4.53e-01 | 70.8% | 52.4% |
| 3402492 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.75 | 60.0 | 4.63e-01 | 86.5% | 72.1% |
| 3996264 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.75 | 61.0 | 5.03e-01 | 87.5% | 94.1% |
| 3626983 | 310.2.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23 | 0.75 | 60.0 | 5.41e-01 | 83.3% | 68.5% |
| 4026926 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.74 | 57.0 | 4.97e-01 | 79.2% | 60.7% |
| 3834594 | 601.27.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF632, DUF630 | 0.74 | 60.0 | 4.97e-01 | 84.4% | 70.3% |
| 3256502 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 61.0 | 4.49e-01 | 87.5% | 38.7% |
| 3503849 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.73 | 66.0 | 4.65e-01 | 100.0% | 60.0% |
| 4523639 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.73 | 67.0 | 5.31e-01 | 100.0% | 71.1% |
| 3390311 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.72 | 56.0 | 5.35e-01 | 81.2% | 74.5% |
| 3782889 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.72 | 64.0 | 4.96e-01 | 100.0% | 63.3% |
| 3716055 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.72 | 65.0 | 4.48e-01 | 100.0% | 71.2% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.72 | 64.0 | 5.82e-01 | 100.0% | 83.1% |
| 3304475 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 65.0 | 4.12e-01 | 100.0% | 35.2% |
| 3465330 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.71 | 59.0 | 4.75e-01 | 86.5% | 52.9% |
| 3738569 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.71 | 53.0 | 5.18e-01 | 78.1% | 76.2% |
| 3379135 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 59.0 | 3.75e-01 | 87.5% | 34.5% |
| 3681524 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 62.0 | 4.06e-01 | 95.8% | 37.5% |
| 4479398 | 3755.1.1.8 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ | 0.70 | 63.0 | 5.48e-01 | 99.0% | 71.7% |
| 3814372 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.70 | 50.0 | 4.93e-01 | 76.0% | 85.7% |
| 3482273 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.70 | 55.0 | 5.31e-01 | 83.3% | 77.1% |
| 4249486 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.69 | 61.0 | 4.46e-01 | 93.8% | 75.8% |
| 3682989 | 5086.1.1.96 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 | 0.69 | 57.0 | 4.90e-01 | 87.5% | 80.0% |
| 4036645 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.68 | 61.0 | 4.87e-01 | 100.0% | 75.9% |
| 4259224 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 60.0 | 5.19e-01 | 100.0% | 69.7% |
| 3376789 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 56.0 | 3.59e-01 | 88.5% | 30.5% |
| 3660998 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 62.0 | 3.97e-01 | 100.0% | 43.8% |
| 3464011 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 58.0 | 3.76e-01 | 93.8% | 27.2% |
| 3649362 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 59.0 | 3.81e-01 | 90.6% | 36.5% |
| 3483587 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 60.0 | 4.53e-01 | 100.0% | 57.5% |
| 4507149 | 4177.1.1.9 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom | 0.67 | 59.0 | 4.57e-01 | 99.0% | 74.5% |
| 3733140 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 58.0 | 5.06e-01 | 100.0% | 81.3% |
| 3962991 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 57.0 | 4.44e-01 | 90.6% | 46.2% |
| 5041261 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 53.0 | 4.68e-01 | 84.4% | 62.2% |
| 3609516 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.66 | 60.0 | 4.93e-01 | 100.0% | 61.7% |
| 4428739 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 59.0 | 4.29e-01 | 99.0% | 76.2% |
| 3972236 | 3755.3.1.42 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CheZ | 0.66 | 59.0 | 4.82e-01 | 100.0% | 63.3% |
| 3697355 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 58.0 | 4.99e-01 | 100.0% | 81.9% |
| 4576287 | 3755.3.1.471 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Paralemmin | 0.66 | 58.0 | 4.94e-01 | 97.9% | 68.4% |
| 3964486 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 59.0 | 4.99e-01 | 100.0% | 67.5% |
| 3932987 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.65 | 57.0 | 4.21e-01 | 97.9% | 38.9% |
| 3976632 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.65 | 61.0 | 5.11e-01 | 97.9% | 67.3% |
| 4988623 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.65 | 58.0 | 4.26e-01 | 100.0% | 40.4% |
| 3532384 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.65 | 55.0 | 4.02e-01 | 94.8% | 35.0% |
| 3505878 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.65 | 55.0 | 3.92e-01 | 93.8% | 43.4% |
| 3683632 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.65 | 58.0 | 4.61e-01 | 100.0% | 73.8% |
| 5005097 | 3710.1.1.0 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain | 0.64 | 59.0 | 5.20e-01 | 97.9% | 91.7% |
| 3435096 | 192.29.1.216 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632 | 0.64 | 56.0 | 5.28e-01 | 99.0% | 92.5% |
| 3382512 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.64 | 57.0 | 3.69e-01 | 100.0% | 23.1% |
| 3627942 | 3755.4.1.1 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 | 0.64 | 58.0 | 4.73e-01 | 100.0% | 83.4% |
| 3831005 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 56.0 | 3.76e-01 | 100.0% | 93.1% |
| 3368370 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 57.0 | 3.70e-01 | 100.0% | 23.4% |
| 1313624 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.63 | 55.0 | 4.65e-01 | 100.0% | 68.3% |
| 4386543 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 54.0 | 3.81e-01 | 92.7% | 34.1% |
| 3559003 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 54.0 | 5.33e-01 | 94.8% | 93.0% |
| 5006400 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 55.0 | 4.13e-01 | 100.0% | 42.2% |
| 2661265 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.61 | 49.0 | 5.30e-01 | 85.4% | 100.0% |
| 4424383 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.60 | 53.0 | 4.37e-01 | 97.9% | 71.4% |
| 3215342 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.60 | 48.0 | 4.87e-01 | 85.4% | 87.4% |
| 5070736 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 53.0 | 4.18e-01 | 99.0% | 50.0% |
| 3386973 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.59 | 48.0 | 4.95e-01 | 90.6% | 100.0% |
| 5009131 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 51.0 | 4.29e-01 | 97.9% | 62.4% |
| 4024105 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 51.0 | 3.66e-01 | 100.0% | 34.5% |
| 4515899 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 43.0 | 3.63e-01 | 95.8% | 60.0% |
D7
medium
residues 1004-1020_1034-1091
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4abxA02 | 6.10.140.1090 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 55.0 | 5.19e-01 | 80.0% | 62.1% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.65 | 45.0 | 4.19e-01 | 74.7% | 56.7% |