BBLF2_BBLF3_linker

Euk-Vir

Phascolarctid_gammaherpesvirus_1

BBLF2_BBLF3_linker__YP_010087481__Phascolarctid_gammaherpesvirus_1__2249313

Identity

70.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Phascolarctid_gammaherpesvirus_1

TaxID: 2249313

View cluster (61 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-119_202-212

PDB

Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152

D2 medium residues 120-201_213-313

PDB

Domain cluster: rep: ORF31__NP_733884__Callitrichine_gammaherpesvirus_3__106331__D132-145_190-351

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	77.6	1.10e-21	44.8%	95.6%

D3 medium residues 314-492

PDB

D4 medium residues 493-630

PDB

Domain cluster: rep: helicase-primase_complex__NP_065539__Alcelaphine_gammaherpesvirus_1__35252__D46-100_112-175

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05774.17 best	Herpes_heli_pri	51.0	2.40e-13	95.7%	85.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bniB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.64	42.0	3.96e-01	97.1%	53.8%
1ygmA01	1.10.220.90	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Mistic	0.54	35.0	4.13e-01	94.9%	100.0%
4udsA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	41.0	3.76e-01	97.1%	61.6%
1m2vB01	1.20.120.730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain	0.52	39.0	3.69e-01	79.0%	80.5%
3efoB01	1.20.120.730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain	0.52	40.0	3.91e-01	81.2%	88.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3482553	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.55	50.0	3.63e-01	100.0%	48.7%
3939952	610.2.1.0 ↗	alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24	0.55	42.0	3.46e-01	81.2%	100.0%
4302929	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.55	43.0	3.86e-01	97.8%	59.5%
3647762	610.2.1.0 ↗	alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24	0.51	39.0	3.29e-01	83.3%	100.0%
3815009	109.4.1.1308 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24	0.51	33.0	2.13e-01	97.8%	13.5%
3876772	610.2.1.0 ↗	alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24	0.50	39.0	3.25e-01	81.9%	100.0%