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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00006

Bact-Vir

BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00006

Identity

Kingdom:
phage

Quality

94.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.83 75.0 7.37e-01 98.5% 91.5%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.82 58.0 5.40e-01 74.6% 84.3%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.77 56.0 5.07e-01 76.1% 62.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 67.0 6.14e-01 100.0% 98.9%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 68.0 5.77e-01 98.5% 91.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 64.0 6.51e-01 100.0% 92.4%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 57.0 4.93e-01 83.6% 78.2%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.71 48.0 3.72e-01 70.1% 38.4%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 56.0 4.84e-01 91.0% 56.2%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 48.0 4.10e-01 74.6% 60.0%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 56.0 4.26e-01 100.0% 40.7%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 45.0 4.56e-01 82.1% 76.9%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 37.0 4.07e-01 100.0% 74.0%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 45.0 4.36e-01 98.5% 65.8%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 33.0 3.55e-01 86.6% 60.0%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 32.0 3.92e-01 88.1% 97.0%
2nclA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.60 40.0 3.83e-01 100.0% 58.0%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 48.0 4.16e-01 89.6% 57.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 43.0 3.77e-01 94.0% 51.0%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 45.0 3.10e-01 85.1% 69.0%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.37e-01 95.5% 46.6%
5kckA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 40.0 2.44e-01 76.1% 14.7%
5jeaC00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 40.0 2.62e-01 80.6% 41.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 29.0 3.30e-01 94.0% 70.2%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 44.0 3.75e-01 100.0% 68.3%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 45.0 4.30e-01 97.0% 100.0%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.32e-01 98.5% 60.8%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 39.0 2.61e-01 83.6% 36.8%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.51 44.0 3.21e-01 100.0% 69.3%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.67e-01 100.0% 58.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.50 29.0 3.16e-01 94.0% 67.3%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4568757 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.92 75.0 7.91e-01 97.0% 95.0%
4959887 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.88 70.0 6.91e-01 83.6% 82.9%
5061231 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.87 74.0 7.86e-01 97.0% 100.0%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.83 66.0 6.99e-01 85.1% 95.0%
5032509 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 63.0 6.38e-01 79.1% 81.5%
5020790 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 64.0 6.97e-01 95.5% 100.0%
3785552 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.82 56.0 4.34e-01 71.6% 48.6%
3219930 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.82 56.0 4.51e-01 71.6% 68.0%
4969162 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 62.0 6.53e-01 83.6% 90.0%
4959480 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 68.0 7.19e-01 97.0% 98.3%
3753952 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.82 56.0 4.49e-01 71.6% 54.4%
5020788 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.81 62.0 6.36e-01 82.1% 84.6%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.79 63.0 5.68e-01 85.1% 78.9%
4959886 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.78 58.0 6.31e-01 89.6% 96.4%
5048184 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.77 69.0 6.24e-01 98.5% 77.8%
3649935 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.76 58.0 5.25e-01 82.1% 84.4%
1396826 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.75 64.0 6.46e-01 100.0% 91.0%
3307519 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.69 60.0 5.93e-01 100.0% 90.0%
5026901 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 46.0 4.84e-01 71.6% 85.0%
5076449 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.66 44.0 3.18e-01 70.1% 36.7%
4507628 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.65 43.0 4.91e-01 77.6% 100.0%
3830856 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.65 43.0 4.86e-01 73.1% 100.0%
3482775 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.65 38.0 4.42e-01 92.5% 84.4%
3649933 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.64 44.0 4.85e-01 76.1% 96.0%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.63 41.0 4.09e-01 94.0% 62.9%
3338669 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 35.0 3.82e-01 94.0% 65.5%
3362766 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.63 44.0 4.83e-01 79.1% 98.0%
4229035 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.62 53.0 3.83e-01 97.0% 44.0%
4117020 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 47.0 4.92e-01 88.1% 93.3%
3215044 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 45.0 2.85e-01 80.6% 33.0%
3720049 2484.1.1.191 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RHSP 0.61 43.0 3.63e-01 97.0% 44.5%
3424158 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 50.0 3.52e-01 95.5% 39.6%
3652544 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 37.0 4.11e-01 77.6% 100.0%
5013117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.27e-01 73.1% 100.0%
3244797 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 41.0 4.01e-01 100.0% 64.0%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 39.0 4.20e-01 83.6% 80.0%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 44.0 3.90e-01 89.6% 53.0%
3618540 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 45.0 4.39e-01 82.1% 100.0%
3923960 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.59 41.0 4.03e-01 88.1% 65.3%
3361215 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.59 42.0 4.40e-01 76.1% 96.7%
3265019 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 39.0 3.37e-01 70.1% 43.7%
3699899 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 44.0 3.71e-01 88.1% 45.8%
4983234 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 44.0 3.27e-01 82.1% 30.3%
3819067 386.1.1.207 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.58 46.0 4.64e-01 91.0% 90.8%
4459875 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.58 39.0 4.26e-01 71.6% 95.9%
3400923 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 34.0 3.62e-01 94.0% 65.0%
3344139 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 42.0 4.45e-01 82.1% 96.4%
4559071 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.58 43.0 4.41e-01 82.1% 89.2%
3435291 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 37.0 4.04e-01 70.1% 92.0%
5064569 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.56 49.0 3.63e-01 100.0% 57.7%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.55 39.0 2.88e-01 76.1% 27.0%
4994780 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.55 49.0 3.41e-01 98.5% 42.3%
5072202 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 47.0 3.45e-01 98.5% 36.3%
5078470 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 36.0 3.42e-01 92.5% 55.3%
4972215 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 37.0 2.65e-01 92.5% 22.9%
3890751 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.69e-01 91.0% 60.0%
3781161 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.53 40.0 3.24e-01 82.1% 66.7%
4997554 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 46.0 3.57e-01 98.5% 66.0%
3887402 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.53 38.0 3.92e-01 82.1% 86.7%
4976214 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 44.0 3.22e-01 97.0% 49.5%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.56e-01 91.0% 100.0%
4032235 3264.1.1.0 0.52 42.0 3.13e-01 88.1% 68.2%
3927286 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 36.0 3.51e-01 71.6% 66.7%
3747562 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.52 39.0 4.05e-01 94.0% 90.0%
3262357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.18e-01 95.5% 38.0%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 42.0 2.70e-01 98.5% 23.0%
4927852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.91e-01 91.0% 91.1%
3587510 101.1.1.32 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.52 41.0 3.33e-01 94.0% 79.3%
4999065 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.52 45.0 3.51e-01 100.0% 63.2%
4977784 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 46.0 3.13e-01 100.0% 41.7%
3636680 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.51 36.0 2.84e-01 74.6% 43.4%
4943798 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 43.0 3.09e-01 98.5% 44.1%
3597564 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.52e-01 95.5% 62.2%
4562142 136.1.1.1 alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.51 43.0 2.69e-01 92.5% 46.3%