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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00017
Bact-VirBC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00017
Identity
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 23-73
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.85 | 78.0 | 4.78e-01 | 100.0% | 77.5% |
| 1ss3A00 | 1.10.287.720 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 | 0.84 | 58.0 | 5.91e-01 | 78.4% | 74.0% |
| 3dzvA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.82 | 69.0 | 4.33e-01 | 94.1% | 20.5% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.82 | 63.0 | 6.67e-01 | 84.3% | 95.6% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.81 | 59.0 | 5.62e-01 | 96.1% | 66.7% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.81 | 58.0 | 5.18e-01 | 94.1% | 54.9% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.80 | 62.0 | 6.46e-01 | 98.0% | 93.5% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.78 | 54.0 | 4.08e-01 | 72.5% | 31.4% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.74 | 58.0 | 5.69e-01 | 86.3% | 76.8% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 62.0 | 5.19e-01 | 92.2% | 70.2% |
| 3l9wA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.73 | 63.0 | 4.39e-01 | 96.1% | 40.5% |
| 1dofA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.73 | 48.0 | 4.67e-01 | 76.5% | 60.7% |
| 1yqgA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.73 | 61.0 | 4.76e-01 | 96.1% | 46.0% |
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 53.0 | 4.24e-01 | 86.3% | 40.2% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 59.0 | 5.67e-01 | 90.2% | 94.7% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.71 | 63.0 | 4.93e-01 | 98.0% | 72.8% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.71 | 53.0 | 4.32e-01 | 84.3% | 97.0% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.70 | 59.0 | 4.17e-01 | 96.1% | 31.1% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.69 | 53.0 | 4.77e-01 | 92.2% | 59.7% |
| 3ci0K02 | 1.10.40.60 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like | 0.69 | 58.0 | 4.51e-01 | 96.1% | 88.5% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.69 | 59.0 | 3.63e-01 | 98.0% | 66.1% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.69 | 59.0 | 3.66e-01 | 100.0% | 46.3% |
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.68 | 56.0 | 4.59e-01 | 96.1% | 50.5% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.68 | 52.0 | 4.38e-01 | 100.0% | 46.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.67 | 50.0 | 4.17e-01 | 100.0% | 46.7% |
| 1rfmA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.66 | 56.0 | 4.19e-01 | 98.0% | 80.3% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.66 | 54.0 | 3.43e-01 | 94.1% | 35.7% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 54.0 | 4.36e-01 | 96.1% | 50.0% |
| 3aogA01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 42.0 | 3.93e-01 | 88.2% | 54.8% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.63 | 50.0 | 4.61e-01 | 84.3% | 82.8% |
| 2plrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 53.0 | 3.59e-01 | 100.0% | 84.4% |
| 3vz3A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.61 | 50.0 | 3.24e-01 | 96.1% | 37.6% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.61 | 41.0 | 3.22e-01 | 78.4% | 30.6% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.60 | 49.0 | 4.37e-01 | 98.0% | 63.2% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.59 | 42.0 | 3.60e-01 | 78.4% | 53.9% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 46.0 | 4.05e-01 | 84.3% | 59.5% |
| 8bykA01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 47.0 | 2.78e-01 | 94.1% | 86.1% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 41.0 | 3.42e-01 | 84.3% | 55.9% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 44.0 | 3.81e-01 | 100.0% | 57.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286008 | 5050.1.1.52 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CNNM | 0.86 | 76.0 | 5.20e-01 | 98.0% | 68.5% |
| 5060609 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.85 | 68.0 | 5.99e-01 | 96.1% | 60.0% |
| 3982811 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.84 | 77.0 | 4.72e-01 | 100.0% | 77.9% |
| 4007382 | 1121.1.1.6 ↗ | alpha superhelices › Hypothetical protein SF216 › Hypothetical protein SF216 › Hypothetical protein SF216 › DUF945 | 0.83 | 69.0 | 4.22e-01 | 100.0% | 15.4% |
| 3588797 | 4084.1.1.0 ↗ | alpha bundles › ChaB-like › ChaB-like › ChaB-like | 0.83 | 69.0 | 6.33e-01 | 92.2% | 70.8% |
| 2389466 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.83 | 70.0 | 5.90e-01 | 94.1% | 67.1% |
| 1208317 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.82 | 71.0 | 5.43e-01 | 96.1% | 56.6% |
| 3590532 | 1075.1.2.13 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › CNNM | 0.82 | 71.0 | 4.94e-01 | 98.0% | 68.5% |
| 4943010 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 65.0 | 5.49e-01 | 98.0% | 52.9% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.80 | 65.0 | 5.92e-01 | 90.2% | 67.6% |
| 3231906 | 397.7.1.4 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX | 0.79 | 63.0 | 6.57e-01 | 92.2% | 100.0% |
| 5064428 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.77 | 65.0 | 4.29e-01 | 96.1% | 23.9% |
| 3244718 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.77 | 68.0 | 5.68e-01 | 98.0% | 76.5% |
| 4234269 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 63.0 | 5.51e-01 | 94.1% | 62.5% |
| 4635506 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.76 | 69.0 | 4.94e-01 | 100.0% | 59.3% |
| 3284058 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.76 | 63.0 | 5.40e-01 | 96.1% | 61.2% |
| 3344802 | 6158.1.1.0 ↗ | alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region | 0.74 | 62.0 | 5.75e-01 | 94.1% | 73.8% |
| 3831122 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.74 | 57.0 | 5.34e-01 | 88.2% | 67.7% |
| 5074758 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.74 | 57.0 | 4.96e-01 | 94.1% | 55.0% |
| 3552352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.73 | 60.0 | 5.18e-01 | 96.1% | 61.2% |
| 5014612 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.72 | 61.0 | 4.41e-01 | 100.0% | 39.6% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.71 | 59.0 | 5.26e-01 | 94.1% | 65.3% |
| 3061243 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.71 | 59.0 | 4.21e-01 | 96.1% | 31.2% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.71 | 52.0 | 4.48e-01 | 78.4% | 53.2% |
| 3810884 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.71 | 61.0 | 4.45e-01 | 100.0% | 77.2% |
| 4934635 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.71 | 58.0 | 3.74e-01 | 98.0% | 21.9% |
| 3798232 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 55.0 | 4.62e-01 | 96.1% | 50.0% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.70 | 58.0 | 4.95e-01 | 98.0% | 56.7% |
| 3474051 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.69 | 57.0 | 5.14e-01 | 96.1% | 66.2% |
| 3489682 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.68 | 56.0 | 5.02e-01 | 96.1% | 65.3% |
| 3505989 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 55.0 | 4.49e-01 | 96.1% | 46.7% |
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.67 | 53.0 | 5.10e-01 | 90.2% | 78.3% |
| 3643620 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.67 | 57.0 | 4.96e-01 | 96.1% | 61.3% |
| 5039471 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.67 | 59.0 | 4.95e-01 | 100.0% | 58.9% |
| 3810044 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.67 | 57.0 | 5.08e-01 | 96.1% | 65.3% |
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.67 | 56.0 | 4.61e-01 | 96.1% | 52.6% |
| 3473557 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.66 | 56.0 | 4.85e-01 | 96.1% | 61.3% |
| 3473554 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.66 | 53.0 | 4.73e-01 | 96.1% | 62.5% |
| 4597106 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.64 | 50.0 | 4.34e-01 | 88.2% | 52.9% |
| 4987541 | 611.8.1.0 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | 0.61 | 53.0 | 4.22e-01 | 100.0% | 90.9% |
| 4943027 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.61 | 51.0 | 3.63e-01 | 94.1% | 76.8% |
| 4991198 | 2.1.1.359 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC | 0.59 | 47.0 | 3.79e-01 | 94.1% | 42.6% |
| 3518975 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.58 | 51.0 | 4.24e-01 | 98.0% | 54.4% |