←Back to structures
BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00126
Bact-VirBC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-222
Domain cluster:
rep: SRR1747045_scaffold_1_prodigal-single.1__X__X__00037__D553-737
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 73.3 | 2.50e-20 | 100.0% | 34.1% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.85 | 82.0 | 5.56e-01 | 100.0% | 36.0% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.76 | 72.0 | 4.78e-01 | 100.0% | 41.8% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.75 | 72.0 | 4.70e-01 | 100.0% | 71.0% |
| 1jhdA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 38.0 | 3.60e-01 | 77.1% | 54.7% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 34.0 | 3.84e-01 | 85.7% | 73.0% |
| 1x6vB03 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 41.0 | 3.74e-01 | 81.1% | 54.9% |
| 3oqvA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.58 | 46.0 | 4.34e-01 | 84.0% | 72.0% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 29.0 | 3.14e-01 | 80.0% | 54.6% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 37.0 | 4.23e-01 | 76.6% | 87.9% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.55 | 44.0 | 4.12e-01 | 85.1% | 69.8% |
| 2jtqA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 29.0 | 3.84e-01 | 74.3% | 100.0% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 42.0 | 3.74e-01 | 84.0% | 77.6% |
| 2b7nA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 30.0 | 3.32e-01 | 94.3% | 69.2% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.93 | 90.0 | 5.89e-01 | 100.0% | 70.9% |
| 5037353 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.92 | 89.0 | 5.87e-01 | 100.0% | 70.2% |
| 5048774 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.92 | 89.0 | 5.86e-01 | 100.0% | 71.6% |
| 4961008 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.92 | 89.0 | 5.83e-01 | 100.0% | 32.4% |
| 4982642 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 89.0 | 5.94e-01 | 100.0% | 35.5% |
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 89.0 | 5.86e-01 | 100.0% | 70.3% |
| 4942624 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 88.0 | 6.44e-01 | 100.0% | 47.1% |
| 5001541 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 89.0 | 5.79e-01 | 100.0% | 31.7% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 88.0 | 5.82e-01 | 100.0% | 70.9% |
| 4934728 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 88.0 | 5.82e-01 | 100.0% | 37.1% |
| 4970624 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 88.0 | 5.91e-01 | 100.0% | 33.7% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 88.0 | 5.69e-01 | 100.0% | 73.0% |
| 4987959 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 87.0 | 5.95e-01 | 100.0% | 76.1% |
| 5057094 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.90 | 87.0 | 5.89e-01 | 100.0% | 34.2% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.89 | 86.0 | 5.93e-01 | 100.0% | 38.9% |
| 3978395 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.89 | 86.0 | 5.63e-01 | 100.0% | 32.6% |
| 3949156 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.89 | 85.0 | 5.62e-01 | 100.0% | 32.6% |
| 4895340 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.88 | 85.0 | 5.83e-01 | 100.0% | 38.4% |
| 5074578 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.87 | 83.0 | 5.54e-01 | 100.0% | 32.8% |
| 4934859 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.81 | 78.0 | 5.64e-01 | 100.0% | 67.1% |
| 3946197 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 75.0 | 5.97e-01 | 98.9% | 69.4% |
| 3164688 | 2500.1.1.6 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › YjjI-like | 0.79 | 76.0 | 5.27e-01 | 100.0% | 37.2% |
| 3983330 | 2500.1.1.6 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › YjjI-like | 0.79 | 75.0 | 5.21e-01 | 100.0% | 34.7% |
| 3512235 | 2500.1.1.6 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › YjjI-like | 0.79 | 75.0 | 5.21e-01 | 100.0% | 34.7% |
| 5040104 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 73.0 | 5.07e-01 | 100.0% | 49.2% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 72.0 | 4.89e-01 | 100.0% | 49.2% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 73.0 | 4.89e-01 | 100.0% | 41.0% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 72.0 | 4.94e-01 | 100.0% | 48.6% |
| 2472944 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 72.0 | 5.20e-01 | 100.0% | 50.2% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.76 | 72.0 | 4.91e-01 | 100.0% | 75.3% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 72.0 | 4.78e-01 | 100.0% | 50.4% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.75 | 71.0 | 4.84e-01 | 100.0% | 50.3% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.75 | 71.0 | 4.82e-01 | 100.0% | 46.3% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.75 | 71.0 | 4.80e-01 | 100.0% | 46.6% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.74 | 71.0 | 4.71e-01 | 100.0% | 42.6% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.74 | 70.0 | 4.87e-01 | 100.0% | 47.9% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.74 | 70.0 | 4.82e-01 | 100.0% | 47.9% |
| 5076048 | 2006.1.4.55 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NRDD | 0.73 | 51.0 | 4.70e-01 | 70.9% | 67.7% |
| 5030118 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.65 | 61.0 | 4.60e-01 | 100.0% | 76.7% |
| 3450582 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 40.0 | 4.63e-01 | 86.9% | 83.8% |
| 3925925 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.59 | 40.0 | 4.01e-01 | 75.4% | 66.7% |
| 3781381 | 7570.1.1.4 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27239 | 0.57 | 36.0 | 3.70e-01 | 97.7% | 62.3% |
| 3451675 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 38.0 | 3.99e-01 | 79.4% | 81.9% |
| 3958048 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 44.0 | 4.07e-01 | 90.3% | 85.8% |
| 1190498 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.51 | 38.0 | 3.93e-01 | 77.1% | 99.4% |
| 4947190 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.51 | 39.0 | 3.72e-01 | 100.0% | 68.7% |
| 4270708 | 2006.1.3.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 | 0.51 | 33.0 | 3.73e-01 | 97.7% | 85.2% |
D2
high
residues 230-350
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 29.5 | 4.70e-07 | 76.0% | 16.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c9fA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 45.0 | 3.42e-01 | 92.6% | 90.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 67.0 | 4.15e-01 | 77.7% | 15.7% |
| 4961008 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.86 | 64.0 | 3.95e-01 | 76.9% | 16.9% |
| 5001541 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.86 | 61.0 | 3.73e-01 | 74.4% | 14.3% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.85 | 64.0 | 3.88e-01 | 76.9% | 14.4% |
| 5044308 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 64.0 | 3.97e-01 | 77.7% | 17.9% |
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.84 | 67.0 | 4.14e-01 | 86.0% | 16.2% |
| 4934728 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 61.0 | 3.77e-01 | 76.9% | 15.3% |
| 5004456 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 64.0 | 3.93e-01 | 84.3% | 15.0% |
| 5057094 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.82 | 59.0 | 3.74e-01 | 77.7% | 16.6% |
| 5048774 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.82 | 59.0 | 3.67e-01 | 74.4% | 15.1% |
| 5037353 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.81 | 60.0 | 3.76e-01 | 76.9% | 16.7% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.81 | 61.0 | 3.83e-01 | 83.5% | 16.0% |
| 4982642 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 58.0 | 3.65e-01 | 74.4% | 16.8% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.80 | 58.0 | 3.69e-01 | 76.0% | 16.5% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.77 | 54.0 | 3.33e-01 | 71.9% | 14.1% |
| 4970624 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.70 | 50.0 | 3.20e-01 | 73.6% | 16.6% |
| 5027411 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.69 | 52.0 | 3.34e-01 | 81.8% | 17.2% |