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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00130
Bact-VirBC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00130
Identity
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-86
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 53.0 | 5.01e-01 | 71.4% | 56.6% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 54.0 | 5.34e-01 | 77.1% | 68.0% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.77 | 60.0 | 5.00e-01 | 82.9% | 55.2% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.74 | 58.0 | 5.56e-01 | 82.9% | 77.2% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 52.0 | 5.17e-01 | 78.6% | 74.7% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.72 | 52.0 | 4.64e-01 | 82.9% | 54.5% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.71 | 55.0 | 4.43e-01 | 82.9% | 75.2% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 56.0 | 4.79e-01 | 85.7% | 91.1% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.71 | 50.0 | 4.47e-01 | 74.3% | 63.9% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.70 | 52.0 | 3.86e-01 | 80.0% | 34.8% |
| 2vx2G02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 45.0 | 4.98e-01 | 70.0% | 85.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 49.0 | 4.89e-01 | 75.7% | 74.3% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.68 | 53.0 | 4.79e-01 | 84.3% | 80.0% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.63 | 48.0 | 4.07e-01 | 82.9% | 81.4% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 52.0 | 3.88e-01 | 92.9% | 71.4% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.63 | 57.0 | 4.49e-01 | 100.0% | 90.1% |
| 4og1A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 42.0 | 4.53e-01 | 70.0% | 86.2% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 46.0 | 4.38e-01 | 82.9% | 83.5% |
| 3psfA05 | 1.10.10.2740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spt6, Death-like domain | 0.58 | 41.0 | 3.70e-01 | 91.4% | 53.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3262638 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.78 | 61.0 | 5.28e-01 | 82.9% | 76.2% |
| 3970977 | 5027.1.1.1 ↗ | extended segments › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › SecE | 0.76 | 54.0 | 4.69e-01 | 74.3% | 51.4% |
| 3616031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.76 | 59.0 | 5.28e-01 | 82.9% | 74.7% |
| 5056430 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.75 | 61.0 | 6.15e-01 | 88.6% | 87.1% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.75 | 57.0 | 5.78e-01 | 82.9% | 80.0% |
| 3589063 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.75 | 50.0 | 4.20e-01 | 70.0% | 42.5% |
| 4034081 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.74 | 53.0 | 4.50e-01 | 75.7% | 47.8% |
| 3460130 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 59.0 | 5.62e-01 | 88.6% | 92.5% |
| 3540152 | 509.1.1.8 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › ZSWIM4-8_C | 0.71 | 54.0 | 4.60e-01 | 87.1% | 50.0% |
| 4978586 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.71 | 49.0 | 4.24e-01 | 78.6% | 46.4% |
| 5071514 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.70 | 54.0 | 5.34e-01 | 82.9% | 77.3% |
| 4453744 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 59.0 | 5.05e-01 | 91.4% | 89.1% |
| 3229748 | 1134.1.1.9 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 | 0.69 | 51.0 | 4.82e-01 | 82.9% | 64.7% |
| 3440212 | 601.18.1.13 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Vwaint | 0.69 | 52.0 | 4.54e-01 | 82.9% | 54.3% |
| 3574981 | 604.12.1.91 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 | 0.68 | 50.0 | 5.05e-01 | 82.9% | 78.6% |
| 4970972 | 604.5.1.83 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane | 0.68 | 52.0 | 5.01e-01 | 82.9% | 78.8% |
| 3773905 | 604.3.1.33 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 | 0.68 | 50.0 | 4.92e-01 | 82.9% | 73.3% |
| 3924801 | 109.4.1.1643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 | 0.68 | 50.0 | 4.54e-01 | 82.9% | 57.9% |
| 5083098 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 49.0 | 4.41e-01 | 78.6% | 75.0% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.66 | 52.0 | 4.62e-01 | 88.6% | 85.7% |
| 3802176 | 604.16.1.3 ↗ | alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › Vwaint | 0.64 | 54.0 | 4.74e-01 | 94.3% | 93.3% |
| 3460830 | 604.16.1.3 ↗ | alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › Vwaint | 0.64 | 54.0 | 4.81e-01 | 97.1% | 93.3% |
| 3686422 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.56 | 40.0 | 3.63e-01 | 82.9% | 53.3% |
D2
medium
residues 87-184
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.67 | 52.0 | 4.92e-01 | 83.7% | 72.9% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 58.0 | 4.83e-01 | 98.0% | 70.3% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 51.0 | 4.59e-01 | 83.7% | 69.9% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 50.0 | 4.96e-01 | 83.7% | 90.5% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.65 | 50.0 | 5.09e-01 | 83.7% | 87.8% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 50.0 | 4.92e-01 | 83.7% | 86.4% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 48.0 | 4.54e-01 | 83.7% | 82.6% |
| 4bx8A04 | 1.25.40.850 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b | 0.61 | 36.0 | 3.78e-01 | 81.6% | 63.0% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.59 | 52.0 | 4.67e-01 | 95.9% | 83.8% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.59 | 44.0 | 4.53e-01 | 83.7% | 84.8% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 44.0 | 4.01e-01 | 82.7% | 61.9% |
| 2vy3A01 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.58 | 43.0 | 3.30e-01 | 79.6% | 50.2% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 45.0 | 3.87e-01 | 83.7% | 71.3% |
| 1he1A00 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.56 | 43.0 | 3.90e-01 | 81.6% | 66.7% |
| 2or0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 43.0 | 3.50e-01 | 82.7% | 74.7% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 43.0 | 3.98e-01 | 83.7% | 75.4% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 42.0 | 3.52e-01 | 82.7% | 75.4% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.54 | 47.0 | 4.12e-01 | 98.0% | 80.4% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 41.0 | 3.59e-01 | 83.7% | 57.6% |
| 3bbyA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 45.0 | 4.26e-01 | 96.9% | 90.6% |
| 7ri3A02 | 1.10.490.40 | Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain | 0.52 | 44.0 | 3.75e-01 | 93.9% | 93.8% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.51 | 36.0 | 3.29e-01 | 74.5% | 55.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4572197 | 109.37.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Anion channel SLAC1-related › Anion channel SLAC1-related › SLAC1 | 0.67 | 59.0 | 4.03e-01 | 100.0% | 73.2% |
| 3770274 | 603.1.1.198 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF4716 | 0.66 | 50.0 | 5.06e-01 | 79.6% | 89.5% |
| 3807941 | 109.4.1.1380 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, IBB, HEAT_2, Arm_3 | 0.66 | 45.0 | 2.83e-01 | 85.7% | 13.1% |
| 1268315 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.66 | 51.0 | 4.77e-01 | 83.7% | 79.7% |
| 3613594 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 50.0 | 4.52e-01 | 83.7% | 72.6% |
| 4408062 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.64 | 50.0 | 4.20e-01 | 84.7% | 73.5% |
| 3885883 | 626.1.1.1 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 | 0.63 | 49.0 | 3.22e-01 | 83.7% | 39.1% |
| 3214290 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.62 | 47.0 | 4.06e-01 | 83.7% | 77.0% |
| 3792008 | 604.1.1.104 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › ANC1_spectrin | 0.60 | 46.0 | 4.49e-01 | 82.7% | 74.5% |
| 3467296 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.58 | 51.0 | 3.20e-01 | 96.9% | 25.6% |
| 3188700 | 109.4.1.1511 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, M-HEAT_ATR | 0.57 | 48.0 | 3.09e-01 | 93.9% | 21.2% |
| 3926776 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.56 | 44.0 | 3.99e-01 | 84.7% | 78.5% |
| 3799208 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 3.10e-01 | 100.0% | 32.4% |
| 3262620 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 43.0 | 3.36e-01 | 100.0% | 38.6% |
| 3414440 | 109.4.1.3514 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, Proteasom_PSMB | 0.53 | 43.0 | 2.85e-01 | 100.0% | 20.5% |
| 3220045 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 36.0 | 3.30e-01 | 91.8% | 53.1% |
| 5078571 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 46.0 | 3.26e-01 | 99.0% | 52.8% |
| 3643671 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 3.73e-01 | 98.0% | 58.7% |
| 5049171 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.50 | 41.0 | 3.15e-01 | 91.8% | 56.0% |
| 3339911 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 44.0 | 4.07e-01 | 100.0% | 81.5% |