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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00237

Bact-Vir

BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00237

Identity

Kingdom:
phage

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-108
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vvmA02 1.10.1740.110 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 34.0 3.46e-01 100.0% 70.6%
4ddpA00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.51 42.0 3.55e-01 95.2% 71.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033827 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 62.0 5.94e-01 97.1% 94.2%
D2 medium residues 109-252
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08275.18 best DNAG_N 36.5 6.50e-09 77.8% 75.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.84 71.0 7.51e-01 92.4% 99.2%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.82 70.0 7.45e-01 89.6% 100.0%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.82 73.0 7.60e-01 94.4% 100.0%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.80 70.0 7.26e-01 92.4% 98.5%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.75 38.0 5.17e-01 87.5% 95.9%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 24.0 3.43e-01 83.3% 85.9%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 38.0 3.39e-01 70.8% 97.6%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.50 31.0 3.34e-01 91.0% 69.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4096247 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.86 72.0 7.78e-01 94.4% 100.0%
4157635 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.86 72.0 7.76e-01 91.0% 100.0%
4434598 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.85 74.0 7.84e-01 94.4% 100.0%
4467859 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.85 71.0 7.66e-01 91.0% 100.0%
4345683 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 71.0 7.62e-01 91.7% 100.0%
1407259 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 70.0 7.51e-01 93.1% 100.0%
4186968 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 72.0 7.59e-01 95.1% 99.2%
4099289 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.83 72.0 7.63e-01 94.4% 100.0%
3387388 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.83 70.0 7.47e-01 91.0% 100.0%
3589490 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.82 72.0 7.51e-01 91.7% 100.0%
4588732 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.82 72.0 7.42e-01 90.3% 100.0%
4043621 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.81 74.0 7.40e-01 95.1% 100.0%
4206082 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.80 69.0 7.31e-01 93.1% 100.0%
4431937 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.79 72.0 7.35e-01 95.8% 97.9%
5003469 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.79 71.0 7.24e-01 93.8% 100.0%
3074400 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.77 52.0 6.17e-01 92.4% 100.0%
3948312 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.75 51.0 6.08e-01 89.6% 99.0%
6450 4023.1.1.2 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › Helic-prim_T7_N 0.73 37.0 5.05e-01 87.5% 95.9%
4111345 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.73 39.0 5.27e-01 91.7% 100.0%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.73 47.0 5.68e-01 93.1% 98.9%
3511263 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.71 43.0 5.13e-01 96.5% 90.5%
3948068 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.69 50.0 5.65e-01 93.1% 99.1%
3476001 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.58 28.0 3.41e-01 75.7% 69.9%
4933792 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 31.0 4.07e-01 86.1% 100.0%
1549078 274.1.1.14 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComP_DUS 0.55 32.0 3.97e-01 99.3% 93.3%
3990074 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.54 36.0 4.05e-01 83.3% 91.4%
3283031 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 27.0 3.32e-01 82.6% 73.7%
3981665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 33.0 3.69e-01 84.0% 81.8%
3989733 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.52 35.0 3.42e-01 92.4% 61.2%
D3 medium residues 253-389
PDB
CATH (87)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2au3A03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.84 69.0 7.28e-01 100.0% 95.2%
5vazA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.84 71.0 7.33e-01 100.0% 94.5%
1t6t200 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.76 52.0 5.77e-01 79.6% 86.4%
3aonB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.71 42.0 4.81e-01 76.6% 80.0%
4k7jA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 58.0 4.85e-01 92.0% 85.8%
2ag5C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 57.0 4.70e-01 92.0% 95.9%
5xtfA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 56.0 4.72e-01 91.2% 95.2%
3tscA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 56.0 4.50e-01 93.4% 97.0%
1gy8D02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 55.0 4.58e-01 90.5% 98.7%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 54.0 4.76e-01 92.0% 81.5%
4n82B00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.65 54.0 5.23e-01 89.8% 96.1%
3d7lA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 56.0 4.93e-01 94.9% 98.5%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.64 54.0 4.73e-01 92.0% 98.5%
3sipC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 44.0 4.30e-01 71.5% 80.9%
1pyoC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 46.0 4.35e-01 75.2% 80.7%
1yd9B00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.63 45.0 4.08e-01 74.5% 79.1%
1td2A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 54.0 4.19e-01 92.0% 80.5%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 53.0 4.03e-01 90.5% 77.7%
5w56B02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.62 48.0 5.01e-01 92.0% 87.5%
3ha2A00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.62 51.0 4.81e-01 88.3% 97.0%
1f1jA00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 53.0 4.48e-01 93.4% 80.4%
5z2lA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 52.0 4.36e-01 92.0% 95.0%
2amjB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.61 51.0 4.64e-01 89.8% 97.8%
1u7zC00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.61 52.0 4.50e-01 92.7% 93.6%
3fxaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.61 50.0 4.47e-01 86.9% 69.1%
5a62A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 56.0 4.43e-01 100.0% 94.1%
7arcP01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 52.0 4.21e-01 94.2% 80.4%
1ihuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 50.0 3.92e-01 88.3% 96.9%
3h5iA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 49.0 5.09e-01 89.1% 92.8%
1yoeA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.60 51.0 3.98e-01 92.0% 93.0%
2vycA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 50.0 5.06e-01 89.1% 92.8%
1sb8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 52.0 4.31e-01 92.0% 86.3%
3odpA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 50.0 4.59e-01 89.1% 72.0%
3ug7C00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 3.96e-01 91.2% 100.0%
3hpxA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 53.0 4.11e-01 94.9% 70.5%
3eywB02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.60 50.0 4.61e-01 89.8% 96.6%
2amlA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 49.0 4.82e-01 88.3% 81.6%
4p02A02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 42.0 3.51e-01 91.2% 41.3%
3loqA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 43.0 4.23e-01 90.5% 70.1%
2yfkA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.59 45.0 4.11e-01 91.2% 58.7%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.59 49.0 4.82e-01 89.1% 83.9%
3n75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 49.0 5.07e-01 89.8% 93.0%
3fijC00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 50.0 4.31e-01 93.4% 97.7%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 49.0 5.11e-01 92.0% 96.0%
4v2xA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 51.0 3.85e-01 95.6% 74.3%
4ivnA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.58 47.0 4.25e-01 87.6% 69.7%
1y1pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 52.0 3.93e-01 100.0% 91.1%
3gffA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 52.0 3.96e-01 100.0% 75.0%
1lsuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 41.0 4.14e-01 91.2% 74.6%
2nv9D02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.57 48.0 4.08e-01 91.2% 61.7%
3aysA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 50.0 3.76e-01 97.8% 80.4%
3gqvA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 46.0 4.09e-01 84.7% 79.5%
4toiA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 44.0 4.09e-01 92.0% 63.5%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 51.0 4.41e-01 99.3% 92.2%
4ofzA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 48.0 4.07e-01 89.8% 88.9%
4yheA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 48.0 3.46e-01 90.5% 72.0%
6h99A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.56 45.0 4.29e-01 83.9% 74.8%
1fw8A01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.56 45.0 3.84e-01 85.4% 88.9%
2jepB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 51.0 3.78e-01 100.0% 84.5%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 47.0 3.47e-01 92.7% 84.9%
4wiwD01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 49.0 3.91e-01 96.4% 74.6%
3s6dA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 50.0 4.03e-01 99.3% 68.1%
6m37B01 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.55 38.0 4.43e-01 100.0% 99.0%
3ndzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 3.70e-01 99.3% 80.3%
4w88B00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 3.73e-01 99.3% 80.0%
2eklA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 42.0 4.48e-01 92.0% 93.4%
1m3sB00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 45.0 4.07e-01 86.9% 73.2%
4yztA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 3.75e-01 97.8% 83.4%
1jeoA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 45.0 4.14e-01 87.6% 71.2%
2qw5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 47.0 3.57e-01 93.4% 85.0%
1b1cA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 49.0 4.59e-01 99.3% 96.4%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.72e-01 89.8% 78.4%
1tufA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.54 42.0 3.47e-01 83.2% 52.3%
3iv3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 49.0 3.72e-01 100.0% 90.2%
4njmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 4.58e-01 91.2% 94.2%
1xv5A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 45.0 4.06e-01 91.2% 99.0%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 46.0 3.25e-01 97.1% 81.5%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 3.99e-01 92.0% 75.5%
4jejA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.53 47.0 3.93e-01 97.8% 71.0%
7jpjB01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.52 44.0 3.64e-01 91.2% 63.0%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.52 48.0 4.06e-01 100.0% 79.5%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 4.34e-01 92.0% 99.3%
4ng4B01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.52 45.0 4.19e-01 97.1% 74.9%
4mybA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 39.0 3.39e-01 81.0% 100.0%
1knwA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.50 45.0 3.73e-01 97.8% 67.8%
1a5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 46.0 3.72e-01 98.5% 76.1%
2yxoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 45.0 3.66e-01 100.0% 58.9%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4089575 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.83 60.0 6.44e-01 100.0% 85.8%
4403849 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.82 61.0 6.59e-01 100.0% 90.4%
4236821 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.77 57.0 5.94e-01 84.7% 83.2%
4967569 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 56.0 5.86e-01 82.5% 82.4%
5037557 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.76 55.0 5.80e-01 82.5% 81.6%
9923 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 51.0 5.73e-01 79.6% 87.0%
4952905 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.75 43.0 5.32e-01 91.2% 87.8%
4941473 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.75 55.0 5.73e-01 85.4% 82.4%
4948683 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.74 56.0 5.96e-01 85.4% 88.3%
4979587 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.74 51.0 5.61e-01 77.4% 86.4%
4975817 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.73 54.0 5.46e-01 83.2% 76.3%
5076095 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 54.0 5.62e-01 85.4% 84.0%
4443421 2007.24.1.1 a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F 0.72 44.0 4.94e-01 77.4% 79.0%
4970599 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.71 57.0 5.70e-01 86.1% 81.4%
4956372 2007.24.1.0 a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like 0.71 42.0 5.27e-01 77.4% 100.0%
3590242 2007.24.1.1 a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F 0.71 42.0 4.76e-01 76.6% 77.7%
5017101 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.69 44.0 5.21e-01 88.3% 96.7%
3738220 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.68 58.0 5.07e-01 92.7% 90.2%
3956046 2003.1.1.85 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SpnB_Rossmann 0.66 56.0 4.76e-01 91.2% 74.1%
3651211 2003.1.1.153 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase, GDP_Man_Dehyd 0.65 45.0 3.15e-01 70.1% 29.0%
None 0.63 53.0 4.10e-01 92.0% 76.9%
None 0.63 53.0 4.00e-01 91.2% 78.5%
3731085 2003.1.1.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.63 53.0 4.36e-01 92.0% 82.0%
3466790 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.63 53.0 3.97e-01 91.2% 78.7%
5058442 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.63 53.0 3.99e-01 91.2% 86.7%
3730283 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.62 51.0 3.83e-01 89.1% 76.3%
3688483 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.62 52.0 3.87e-01 89.8% 75.4%
5041561 2003.1.1.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.61 51.0 3.99e-01 90.5% 66.7%
3634174 7579.1.1.92 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.61 54.0 4.18e-01 96.4% 99.3%
None 0.61 51.0 4.38e-01 90.5% 92.1%
3512158 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.60 39.0 3.85e-01 86.9% 59.3%
3171546 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 53.0 3.68e-01 95.6% 46.7%
4330211 7604.1.1.1 a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.60 51.0 5.15e-01 91.2% 97.9%
5079883 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.60 50.0 4.58e-01 91.2% 78.9%
3244232 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 4.49e-01 94.2% 89.5%
3751104 207.1.1.126 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PRAME_C 0.59 41.0 3.06e-01 76.6% 29.1%
3948396 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.59 48.0 4.38e-01 87.6% 70.8%
3834277 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 46.0 4.23e-01 95.6% 62.8%
None 0.59 49.0 3.72e-01 92.0% 95.9%
3723349 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 39.0 3.74e-01 86.9% 57.0%
4322603 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.58 48.0 4.42e-01 89.1% 73.7%
4889798 2003.1.9.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB 0.58 43.0 3.37e-01 92.7% 37.4%
4033918 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.58 47.0 4.12e-01 87.6% 63.3%
3385229 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.58 49.0 3.61e-01 92.0% 58.9%
3404949 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.58 52.0 3.86e-01 97.1% 45.4%
2414543 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.58 49.0 3.88e-01 92.0% 73.5%
4173511 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.58 48.0 4.30e-01 89.8% 67.2%
4247988 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.58 48.0 3.84e-01 92.0% 77.9%
3964538 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.57 48.0 4.16e-01 89.8% 61.4%
5051528 2004.1.1.85 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.57 49.0 3.71e-01 92.7% 96.7%
3372663 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 41.0 4.15e-01 89.1% 74.1%
3279205 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.57 47.0 4.07e-01 89.8% 59.1%
5052674 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.57 48.0 4.22e-01 89.8% 69.0%
170491 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.57 52.0 3.96e-01 100.0% 75.0%
4944576 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.57 49.0 3.94e-01 92.7% 75.5%
3453200 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.57 48.0 4.20e-01 92.0% 88.8%
5061614 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.57 50.0 3.92e-01 97.1% 83.4%
5015910 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.56 44.0 3.56e-01 83.2% 52.1%
1787694 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.56 48.0 4.30e-01 92.7% 96.9%
4217318 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 50.0 3.65e-01 97.1% 60.0%
869515 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 49.0 3.75e-01 99.3% 70.6%
4930272 7582.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD 0.54 45.0 4.62e-01 100.0% 93.8%
3405488 2002.1.1.42 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.54 47.0 3.30e-01 96.4% 81.9%
5045647 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.54 48.0 3.93e-01 95.6% 81.2%
4077066 2002.1.1.87 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase 0.54 47.0 3.55e-01 94.2% 65.8%
3174574 2003.1.11.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.54 45.0 4.31e-01 91.2% 80.6%
4562022 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.54 45.0 3.71e-01 91.2% 69.2%
3618662 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.53 45.0 4.00e-01 92.0% 95.5%
4935580 2003.1.9.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.53 46.0 4.51e-01 93.4% 86.9%
4009702 300.1.1.20 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PF30425 0.53 42.0 3.62e-01 86.9% 52.7%
4102088 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 41.0 3.62e-01 83.9% 100.0%
3721945 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.53 45.0 4.04e-01 95.6% 67.0%
3475304 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.52 43.0 3.36e-01 89.8% 40.1%
4190719 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 43.0 4.34e-01 89.1% 100.0%
4930996 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 45.0 3.89e-01 93.4% 67.1%
3192276 207.1.1.33 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF6546 0.52 46.0 3.31e-01 98.5% 54.5%
3955151 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 41.0 3.11e-01 84.7% 57.2%
3614641 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 38.0 3.30e-01 76.6% 89.3%
3283640 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 47.0 3.54e-01 100.0% 79.4%
3987755 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.51 46.0 3.70e-01 97.8% 65.3%
2756219 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.51 43.0 3.53e-01 91.2% 63.4%
4936255 2004.1.1.202 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.51 43.0 3.80e-01 91.2% 91.5%
3716612 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.50 41.0 3.50e-01 94.9% 52.6%
3177552 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.50 41.0 3.90e-01 88.3% 73.8%
332215 2002.1.1.103 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP,PHP_C 0.50 45.0 3.66e-01 100.0% 58.9%