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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00284
Bact-VirBC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00284
Identity
- Kingdom:
- phage
Quality
44.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-71
D2
high
residues 161-218
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.92 | 44.0 | 4.31e-01 | 72.4% | 45.9% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.84 | 67.0 | 6.88e-01 | 86.2% | 96.4% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.76 | 54.0 | 4.41e-01 | 94.8% | 41.1% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.75 | 56.0 | 5.45e-01 | 81.0% | 76.9% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 59.0 | 5.03e-01 | 87.9% | 94.6% |
| 5tevB02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.67 | 56.0 | 4.75e-01 | 98.3% | 77.7% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.66 | 49.0 | 4.17e-01 | 82.8% | 92.2% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 34.0 | 3.37e-01 | 100.0% | 48.4% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 47.0 | 4.55e-01 | 100.0% | 72.1% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 47.0 | 4.13e-01 | 100.0% | 55.8% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 43.0 | 3.54e-01 | 100.0% | 40.0% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 52.0 | 3.72e-01 | 94.8% | 84.4% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.60 | 51.0 | 3.83e-01 | 98.3% | 37.9% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.60 | 48.0 | 4.39e-01 | 100.0% | 65.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.60 | 51.0 | 4.41e-01 | 93.1% | 72.4% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 54.0 | 4.32e-01 | 100.0% | 82.9% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 45.0 | 3.53e-01 | 87.9% | 38.2% |
| 3jtgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 3.34e-01 | 81.0% | 44.7% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.58 | 38.0 | 3.81e-01 | 87.9% | 67.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 51.0 | 4.00e-01 | 100.0% | 50.0% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.95e-01 | 93.1% | 65.9% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.53 | 38.0 | 4.16e-01 | 84.5% | 100.0% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 41.0 | 4.07e-01 | 100.0% | 83.9% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.51 | 45.0 | 3.22e-01 | 100.0% | 81.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3257377 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.95 | 77.0 | 7.12e-01 | 86.2% | 70.0% |
| 3930571 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.92 | 82.0 | 7.61e-01 | 94.8% | 80.0% |
| 4121822 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.92 | 75.0 | 8.10e-01 | 87.9% | 100.0% |
| 3737653 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.90 | 72.0 | 7.64e-01 | 84.5% | 100.0% |
| 3222410 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.86 | 61.0 | 6.88e-01 | 86.2% | 100.0% |
| 3635200 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.85 | 60.0 | 6.20e-01 | 77.6% | 78.2% |
| 3571045 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.85 | 60.0 | 6.72e-01 | 86.2% | 100.0% |
| 3701468 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.84 | 70.0 | 6.75e-01 | 89.7% | 80.0% |
| 3989397 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.84 | 68.0 | 7.01e-01 | 87.9% | 92.7% |
| 3457908 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.83 | 60.0 | 6.67e-01 | 81.0% | 97.8% |
| 3489475 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.83 | 63.0 | 6.23e-01 | 81.0% | 80.0% |
| 1066185 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.82 | 64.0 | 6.64e-01 | 87.9% | 96.3% |
| 3267637 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.81 | 57.0 | 6.04e-01 | 74.1% | 88.0% |
| 3191289 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.81 | 59.0 | 6.33e-01 | 77.6% | 90.0% |
| 3881311 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.80 | 56.0 | 6.22e-01 | 74.1% | 97.8% |
| 3994610 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.79 | 63.0 | 6.12e-01 | 93.1% | 78.5% |
| 3172891 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.78 | 58.0 | 6.12e-01 | 81.0% | 100.0% |
| 3734131 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.76 | 62.0 | 6.01e-01 | 91.4% | 80.0% |
| 4020548 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.73 | 55.0 | 3.45e-01 | 98.3% | 15.9% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 43.0 | 4.28e-01 | 86.2% | 58.3% |
| 5029464 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 53.0 | 4.76e-01 | 100.0% | 58.7% |
| 1679631 | 142.1.1.8 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › PhyR_sigma2 | 0.69 | 46.0 | 4.25e-01 | 91.4% | 53.3% |
| 3583564 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.69 | 52.0 | 4.97e-01 | 89.7% | 68.6% |
| 3607325 | 5071.1.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.69 | 42.0 | 4.49e-01 | 100.0% | 72.0% |
| 3730448 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.66 | 59.0 | 3.74e-01 | 100.0% | 33.0% |
| 2832675 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.64 | 56.0 | 3.84e-01 | 100.0% | 29.8% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.63 | 48.0 | 4.68e-01 | 100.0% | 76.9% |
| 1318693 | 3895.1.1.1 ↗ | extended segments › YgaP transmembrane domain › YgaP transmembrane domain › YgaP transmembrane domain › YgaP-like_TM | 0.62 | 47.0 | 4.55e-01 | 100.0% | 72.1% |
| 3278304 | 103.18.1.0 ↗ | alpha arrays › RuvA-C | 0.59 | 41.0 | 4.56e-01 | 82.8% | 93.3% |
| 3673226 | 622.2.1.0 ↗ | alpha bundles › YvfG-like › YvfG-like › YvfG-like | 0.59 | 41.0 | 4.24e-01 | 75.9% | 78.2% |
| 4333013 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.57 | 50.0 | 4.56e-01 | 100.0% | 72.5% |
| 3971484 | 5063.1.1.2 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › MadL | 0.56 | 47.0 | 3.79e-01 | 93.1% | 47.8% |
| 3903963 | 192.29.1.225 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRC8_N | 0.55 | 47.0 | 4.44e-01 | 100.0% | 80.0% |
| 3715642 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.52 | 42.0 | 3.94e-01 | 93.1% | 72.0% |