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BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00334

Bact-Vir

BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00334

Identity

Kingdom:
phage

Quality

64.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-101
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.69 48.0 3.43e-01 96.5% 25.5%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 38.0 4.44e-01 96.5% 91.2%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 58.0 3.65e-01 100.0% 32.5%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 51.0 4.31e-01 89.5% 69.4%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.21e-01 86.0% 74.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 55.0 3.47e-01 100.0% 32.1%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 54.0 3.42e-01 98.2% 30.5%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 42.0 3.04e-01 71.9% 86.5%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 52.0 3.26e-01 98.2% 85.3%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 52.0 4.05e-01 100.0% 74.1%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.61 54.0 4.56e-01 100.0% 94.7%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 53.0 4.22e-01 100.0% 84.9%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.24e-01 98.2% 20.6%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.61 51.0 3.28e-01 100.0% 23.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.50e-01 80.7% 38.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.09e-01 82.5% 83.5%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 49.0 3.59e-01 94.7% 93.4%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 49.0 3.22e-01 94.7% 52.7%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 47.0 3.28e-01 87.7% 48.0%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 47.0 3.37e-01 91.2% 54.1%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 42.0 3.21e-01 80.7% 93.7%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 3.20e-01 100.0% 26.6%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.59 44.0 4.59e-01 84.2% 88.7%
3apqA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 47.0 3.81e-01 93.0% 90.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.81e-01 73.7% 68.1%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.03e-01 100.0% 26.4%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.58 51.0 3.95e-01 100.0% 59.8%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.58 42.0 3.85e-01 80.7% 98.7%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 3.22e-01 86.0% 62.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.79e-01 75.4% 64.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 48.0 3.69e-01 100.0% 58.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 40.0 4.28e-01 75.4% 93.8%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 41.0 3.00e-01 80.7% 85.5%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 47.0 3.63e-01 100.0% 68.1%
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.35e-01 77.2% 94.2%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 42.0 4.35e-01 84.2% 92.2%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 41.0 4.31e-01 84.2% 92.2%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 44.0 3.35e-01 94.7% 68.6%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.30e-01 75.4% 98.0%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 3.33e-01 82.5% 95.7%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.55 48.0 3.74e-01 100.0% 62.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.91e-01 80.7% 83.6%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 41.0 4.33e-01 84.2% 92.2%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.20e-01 98.2% 82.5%
2levA00 4.10.430.10 Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain 0.54 31.0 3.17e-01 96.5% 56.1%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.89e-01 87.7% 91.8%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 46.0 3.79e-01 96.5% 55.8%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.77e-01 100.0% 23.2%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 3.93e-01 100.0% 78.4%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 40.0 2.87e-01 86.0% 67.0%
2e63A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 40.0 2.96e-01 87.7% 68.2%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.62e-01 84.2% 86.1%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 35.0 3.37e-01 78.9% 75.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.85 53.0 5.39e-01 98.2% 65.5%
5041686 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.75 56.0 4.11e-01 82.5% 31.0%
4933484 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 62.0 3.98e-01 93.0% 85.5%
3254426 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.74 54.0 4.09e-01 77.2% 39.3%
3266702 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 54.0 4.60e-01 78.9% 74.2%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.00e-01 93.0% 95.0%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.72 59.0 5.51e-01 91.2% 74.3%
3592053 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.72 50.0 3.34e-01 71.9% 20.5%
3724602 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.72 63.0 3.84e-01 100.0% 24.9%
3902819 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.71 55.0 3.37e-01 96.5% 13.2%
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.70 63.0 5.48e-01 98.2% 85.9%
5026087 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.70 61.0 3.67e-01 100.0% 22.6%
5019455 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 58.0 4.07e-01 94.7% 97.4%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 53.0 3.21e-01 82.5% 22.6%
3343255 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.70 62.0 3.61e-01 100.0% 19.8%
3645007 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.69 50.0 4.40e-01 77.2% 78.8%
5013260 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.69 52.0 4.80e-01 89.5% 62.7%
4030565 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 50.0 3.09e-01 78.9% 24.5%
5011958 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.68 52.0 4.35e-01 84.2% 89.0%
3736787 331.3.1.2 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.67 57.0 3.62e-01 100.0% 18.9%
3685785 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 47.0 3.18e-01 75.4% 62.6%
3803844 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 57.0 3.47e-01 100.0% 23.6%
5050433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.91e-01 73.7% 91.1%
3738714 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.66 52.0 4.18e-01 86.0% 70.9%
4104221 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.66 50.0 2.94e-01 84.2% 15.3%
4078549 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.65 44.0 3.34e-01 71.9% 37.3%
3251013 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 58.0 3.50e-01 98.2% 20.8%
3219424 5.1.4.585 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29539, PF29566 0.65 57.0 3.32e-01 100.0% 17.0%
4019953 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.64 55.0 3.36e-01 100.0% 25.2%
3588182 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.64 48.0 3.99e-01 82.5% 60.0%
3486330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.62e-01 73.7% 86.0%
5046207 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.41e-01 94.7% 29.6%
3609597 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.63 43.0 4.32e-01 73.7% 81.7%
4545587 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.62 55.0 3.24e-01 100.0% 17.3%
3993098 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.62 55.0 3.15e-01 100.0% 13.2%
3862126 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.62 43.0 4.27e-01 73.7% 83.3%
4225207 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.62 44.0 4.35e-01 75.4% 71.7%
3761440 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.44e-01 75.4% 80.0%
3239831 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 3.61e-01 86.0% 41.4%
3659226 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 52.0 3.56e-01 100.0% 38.7%
3931904 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.61 44.0 4.46e-01 75.4% 90.9%
3356297 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 50.0 3.97e-01 96.5% 63.8%
5042477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.66e-01 75.4% 93.3%
5035446 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.61 46.0 4.75e-01 84.2% 87.3%
3378508 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.60 52.0 3.30e-01 98.2% 29.5%
5038003 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.60 43.0 4.57e-01 77.2% 90.0%
3221538 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.20e-01 100.0% 29.7%
3211804 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 3.00e-01 86.0% 19.4%
3302660 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.60 41.0 2.80e-01 71.9% 20.0%
3750824 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.59 50.0 3.16e-01 100.0% 21.3%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 44.0 4.47e-01 80.7% 92.7%
3738698 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.59 51.0 4.05e-01 100.0% 68.3%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.58 38.0 3.21e-01 71.9% 37.9%
3218646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.76e-01 96.5% 96.9%
4030203 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 2.71e-01 100.0% 9.1%
3845334 10.1.1.23 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.56 42.0 3.09e-01 84.2% 99.4%
4030008 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.98e-01 98.2% 35.6%
3662052 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.56 42.0 3.73e-01 84.2% 55.3%
5078872 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 44.0 2.78e-01 94.7% 18.1%
3367301 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.55 40.0 4.07e-01 82.5% 83.3%
4929797 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 43.0 4.32e-01 93.0% 89.8%