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BGLF5

Euk-Vir

Phascolarctid_gammaherpesvirus_1

BGLF5__YP_010087479__Phascolarctid_gammaherpesvirus_1__2249313

Identity

Accession:: YP_010087479 ↗
Protein ID:: BGLF5
Kingdom:: euk

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Phascolarctid_gammaherpesvirus_1

TaxID: 2249313

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-171_439-467

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	103.1	2.20e-29	84.5%	33.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rhmC00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	33.0	3.42e-01	89.5%	62.1%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	28.0	3.79e-01	74.0%	97.0%
1ny9A00	1.10.490.50	Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators	0.52	24.0	3.30e-01	91.5%	88.3%
4gycA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	37.0	3.64e-01	73.5%	86.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.86	83.0	6.19e-01	100.0%	99.3%
4999927	3651.1.1.1 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B	0.59	32.0	4.26e-01	79.5%	99.0%
3429372	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.52	36.0	2.60e-01	70.5%	51.3%
3344486	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.51	36.0	2.57e-01	71.0%	53.6%
3415404	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.51	36.0	2.55e-01	72.0%	55.2%
4055484	1075.5.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ	0.50	43.0	3.70e-01	96.0%	58.4%

D2 medium residues 172-239

PDB

Domain cluster: rep: JM65__YP_238368__Macaca_fuscata_rhadinovirus__272551__D177-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	69.1	4.50e-19	100.0%	15.6%

D3 medium residues 240-334_400-410

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	108.4	5.30e-31	99.1%	21.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.94	90.0	5.70e-01	100.0%	36.2%
2883297	101.1.1.7 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18	0.55	29.0	2.36e-01	83.0%	25.4%

D4 medium residues 335-399_422-438

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	60.2	2.20e-16	80.5%	14.1%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5h7kA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	45.0	3.23e-01	82.9%	65.7%
1ldjA05	4.10.1030.10	Few Secondary Structures › Irregular › Ring Box Chain A; domain 5 › Ring Box Chain A; domain 5	0.58	30.0	3.19e-01	73.2%	52.7%
4d10F01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.55	41.0	3.17e-01	78.0%	70.9%
2ql8A00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.55	38.0	3.20e-01	70.7%	67.1%
6usmB01	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.55	37.0	3.14e-01	70.7%	81.0%
3venA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.55	41.0	2.97e-01	79.3%	61.8%
3obaA03	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.52	43.0	2.92e-01	98.8%	24.4%
6vq6H01	1.10.287.3240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	36.0	2.64e-01	73.2%	78.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605618	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.63	47.0	3.81e-01	79.3%	93.5%
3326962	3794.1.1.3 ↗	a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT	0.60	42.0	3.59e-01	73.2%	47.4%
3788618	4001.1.1.0 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins	0.60	36.0	3.30e-01	74.4%	45.7%
4799073	309.1.1.4 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C	0.54	37.0	3.49e-01	70.7%	59.2%
1308428	206.1.1.32 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › LepB_N	0.53	33.0	3.36e-01	70.7%	62.7%
3687618	304.9.1.79 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976	0.52	36.0	2.96e-01	73.2%	81.2%
3593173	4001.1.1.0 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins	0.52	36.0	3.12e-01	73.2%	52.6%
4002678	4001.1.1.0 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins	0.52	36.0	3.29e-01	70.7%	83.8%
4944215	3268.1.1.0 ↗	a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase	0.51	39.0	3.88e-01	84.1%	87.8%
4018180	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.51	43.0	3.04e-01	92.7%	75.3%
3319564	219.1.1.113 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979	0.50	35.0	2.83e-01	72.0%	95.6%
3373362	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	43.0	2.59e-01	96.3%	48.7%