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BK013345.1__DAD54620.1__X__00037

Bact-Vir

BK013345.1__DAD54620.1__X__00037

Identity

Accession:
BK013345 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Aquificae_Conch_Spring_virus

TaxID: 2770615

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-176
PDB
D2 medium residues 184-305
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gm6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.66 43.0 3.17e-01 95.9% 25.3%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 48.0 4.18e-01 94.3% 52.0%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 57.0 4.05e-01 95.9% 85.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.62 37.0 3.97e-01 75.4% 67.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 44.0 4.18e-01 78.7% 62.1%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.60 47.0 3.00e-01 82.8% 43.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 45.0 3.95e-01 92.6% 52.7%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 41.0 3.59e-01 71.3% 97.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 40.0 3.95e-01 77.9% 63.6%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.59 45.0 3.67e-01 80.3% 51.3%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 40.0 3.05e-01 70.5% 52.7%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 42.0 3.79e-01 95.1% 54.7%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 42.0 3.70e-01 77.0% 57.6%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 45.0 3.44e-01 83.6% 66.1%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 45.0 3.15e-01 85.2% 54.2%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.90e-01 80.3% 63.7%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 43.0 3.30e-01 82.8% 75.4%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 3.76e-01 80.3% 58.8%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.55 41.0 3.40e-01 79.5% 86.2%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 41.0 3.96e-01 94.3% 68.3%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 40.0 4.30e-01 82.0% 100.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 3.75e-01 70.5% 94.7%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 45.0 3.36e-01 97.5% 63.2%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 40.0 3.12e-01 82.0% 98.9%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 46.0 3.34e-01 99.2% 42.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.51 36.0 3.98e-01 73.8% 89.0%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 45.0 3.28e-01 100.0% 42.5%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.74e-01 78.7% 96.2%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.00e-01 82.8% 86.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.75 46.0 4.56e-01 78.7% 59.2%
3210934 77.3.1.7 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 0.66 38.0 4.15e-01 85.2% 66.7%
3408795 12.1.1.60 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.66 34.0 4.70e-01 77.9% 100.0%
3402405 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.66 34.0 4.64e-01 78.7% 98.4%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 45.0 5.01e-01 91.8% 88.0%
4021785 1100.1.1.0 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein 0.64 54.0 4.27e-01 89.3% 90.0%
3992499 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.64 52.0 4.15e-01 86.1% 93.2%
3740154 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.64 53.0 4.20e-01 88.5% 95.1%
3625846 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.64 54.0 4.18e-01 90.2% 94.2%
3598877 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 48.0 4.42e-01 79.5% 88.1%
3251788 9.1.1.37 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.63 40.0 3.63e-01 74.6% 47.3%
3928712 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.63 53.0 4.20e-01 91.8% 94.5%
5043396 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.62 47.0 3.90e-01 79.5% 84.2%
3516317 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.62 52.0 4.16e-01 91.0% 95.5%
4177915 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.62 43.0 3.90e-01 72.1% 98.2%
3250326 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.60 53.0 4.14e-01 96.7% 83.9%
3609718 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 47.0 3.55e-01 83.6% 91.8%
3396841 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.59 52.0 4.19e-01 95.9% 87.4%
4188109 5084.5.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.59 47.0 3.42e-01 84.4% 74.7%
3338423 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.58 43.0 4.03e-01 99.2% 62.7%
3619927 9.2.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7042 0.58 42.0 4.34e-01 73.8% 94.8%
4472477 5084.5.1.35 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 0.56 44.0 3.30e-01 83.6% 61.3%
4001579 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 39.0 4.08e-01 72.1% 93.9%
3981844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.01e-01 84.4% 36.4%
3829694 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 49.0 3.66e-01 98.4% 52.4%
3611395 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.55 48.0 4.30e-01 93.4% 75.8%
3356246 5084.5.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF28482 0.54 43.0 3.60e-01 84.4% 57.9%
2082647 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 46.0 3.76e-01 95.9% 97.6%
3459220 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 49.0 3.59e-01 100.0% 59.1%
386453 881.1.1.6 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.54 39.0 3.62e-01 79.5% 58.1%
3447653 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 48.0 3.60e-01 100.0% 53.4%
3629780 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 46.0 3.31e-01 98.4% 43.5%
5037589 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 3.36e-01 100.0% 45.5%
3578584 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.52 40.0 4.22e-01 83.6% 100.0%
3472947 9.1.1.53 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7044 0.51 38.0 4.01e-01 79.5% 95.5%
4673653 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.51 41.0 3.83e-01 86.1% 97.3%
3918435 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 36.0 2.88e-01 75.4% 81.8%
D3 medium residues 306-385
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 29.0 3.15e-01 80.0% 52.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 30.0 3.63e-01 88.7% 76.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 33.0 3.76e-01 85.0% 80.4%
1u0tA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.56 47.0 4.02e-01 95.0% 100.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.77e-01 87.5% 83.6%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 39.0 3.81e-01 72.5% 100.0%
3pfnC02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.55 46.0 3.96e-01 96.2% 98.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.46e-01 96.2% 66.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4557781 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.57 51.0 3.98e-01 100.0% 84.6%
4332116 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.56 50.0 3.94e-01 100.0% 82.7%
68497 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.56 29.0 3.39e-01 85.0% 71.4%
4526972 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.55 46.0 3.78e-01 98.8% 84.8%
4078549 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 38.0 3.15e-01 97.5% 38.7%
4224755 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.55 48.0 3.87e-01 100.0% 84.0%
3739742 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 3.06e-01 95.0% 88.3%
4119524 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.54 47.0 3.78e-01 100.0% 84.2%
5035993 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.54 46.0 3.79e-01 98.8% 84.4%
5061984 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.54 47.0 3.85e-01 100.0% 96.8%
4946958 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.54 47.0 3.79e-01 100.0% 85.0%
4358753 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.54 47.0 3.73e-01 100.0% 81.2%
4023922 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 37.0 3.15e-01 97.5% 41.4%
3758025 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 37.0 3.29e-01 97.5% 48.3%
4316264 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 47.0 3.78e-01 100.0% 84.4%
5048508 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 45.0 3.72e-01 98.8% 85.0%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 37.0 3.08e-01 97.5% 38.7%
4282594 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 37.0 3.17e-01 97.5% 43.0%
3386275 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.53 29.0 3.35e-01 82.5% 71.7%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.65e-01 87.5% 66.7%
4178649 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 45.0 3.66e-01 100.0% 81.0%
4060911 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 45.0 3.68e-01 98.8% 84.4%
4038222 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.53 46.0 3.89e-01 100.0% 96.4%
4994733 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.52 45.0 3.68e-01 98.8% 82.5%
5066327 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.52 44.0 3.70e-01 98.8% 90.0%
4941553 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.52 44.0 3.70e-01 98.8% 91.0%
4029125 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.51 30.0 1.98e-01 81.2% 12.1%
3993968 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.51 39.0 3.26e-01 97.5% 45.5%
3323984 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.51 37.0 2.90e-01 97.5% 33.5%
3440815 5.1.11.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.50 42.0 2.92e-01 100.0% 97.4%