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BK013346.1__DAD54639.1__X__00044

Bact-Vir

BK013346.1__DAD54639.1__X__00044

Identity

Accession:
BK013346 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

TaxID: 2770616

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-107
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.76 38.0 4.08e-01 84.8% 56.5%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 45.0 3.78e-01 100.0% 40.0%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.69 44.0 4.80e-01 97.0% 77.1%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.67 41.0 4.64e-01 99.0% 84.3%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 33.0 3.64e-01 84.8% 59.3%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 3.63e-01 97.0% 36.7%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 32.0 3.46e-01 78.8% 54.8%
3douA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 40.0 3.30e-01 100.0% 36.6%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 32.0 3.40e-01 86.9% 53.4%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 44.0 3.32e-01 98.0% 31.9%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.96e-01 99.0% 59.8%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 3.70e-01 100.0% 35.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 44.0 3.68e-01 77.8% 86.5%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 33.0 3.29e-01 85.9% 50.0%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 3.86e-01 99.0% 66.3%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 48.0 3.73e-01 89.9% 60.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 36.0 3.99e-01 100.0% 81.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.57 37.0 3.62e-01 99.0% 58.6%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 48.0 3.71e-01 90.9% 58.5%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.57 41.0 3.31e-01 74.7% 90.1%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 46.0 3.70e-01 84.8% 78.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 41.0 4.24e-01 75.8% 98.9%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 31.0 3.41e-01 84.8% 64.6%
2xdhA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 3.33e-01 100.0% 48.6%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.44e-01 80.8% 91.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 4.07e-01 88.9% 89.0%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.34e-01 98.0% 37.2%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.54 32.0 3.27e-01 88.9% 59.4%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 29.0 3.33e-01 83.8% 72.2%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.31e-01 85.9% 67.3%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 44.0 3.18e-01 89.9% 46.8%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.56e-01 84.8% 96.9%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.46e-01 85.9% 96.7%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.46e-01 76.8% 92.2%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.61e-01 85.9% 90.8%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.42e-01 80.8% 95.9%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 45.0 3.36e-01 97.0% 45.3%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 40.0 3.24e-01 85.9% 69.9%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 44.0 3.49e-01 94.9% 61.2%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.53e-01 84.8% 91.7%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.51 31.0 3.18e-01 89.9% 61.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.65e-01 89.9% 62.3%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.50 43.0 3.35e-01 96.0% 96.9%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 41.0 3.87e-01 89.9% 91.8%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 39.0 3.39e-01 85.9% 75.8%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 44.0 3.33e-01 97.0% 45.9%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 44.0 4.15e-01 98.0% 92.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073461 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.75 56.0 4.46e-01 77.8% 75.8%
4806761 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 36.0 3.53e-01 83.8% 44.8%
4031750 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.71 51.0 5.14e-01 74.7% 93.9%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 51.0 3.77e-01 75.8% 42.7%
4943463 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.70 37.0 3.71e-01 84.8% 50.0%
3222053 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.70 54.0 4.14e-01 81.8% 68.0%
3228574 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 50.0 3.70e-01 76.8% 42.1%
3239249 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 50.0 3.67e-01 75.8% 51.0%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 51.0 3.78e-01 78.8% 52.2%
3603717 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 42.0 4.63e-01 98.0% 77.5%
3233897 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 52.0 4.85e-01 80.8% 96.7%
3451281 71.1.1.12 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.67 51.0 3.65e-01 81.8% 84.3%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 48.0 4.50e-01 75.8% 83.2%
5014255 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.66 61.0 5.45e-01 100.0% 99.3%
4778785 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 34.0 3.72e-01 84.8% 59.0%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 50.0 3.73e-01 81.8% 45.9%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 52.0 3.84e-01 85.9% 40.3%
3220737 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.65 52.0 3.71e-01 84.8% 35.5%
5037122 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.65 48.0 3.79e-01 76.8% 89.2%
3599554 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 45.0 3.90e-01 100.0% 48.0%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 51.0 3.72e-01 82.8% 46.4%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 52.0 4.08e-01 87.9% 47.6%
4256135 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.64 49.0 3.92e-01 80.8% 70.5%
4681650 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.64 50.0 4.16e-01 83.8% 84.0%
4408461 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.64 51.0 4.13e-01 84.8% 82.0%
3251868 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.63 44.0 3.90e-01 100.0% 50.7%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 56.0 3.89e-01 96.0% 36.9%
3244243 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 50.0 3.93e-01 82.8% 57.9%
4960625 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.63 47.0 3.77e-01 76.8% 93.5%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 51.0 4.65e-01 86.9% 76.2%
3214923 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 50.0 4.07e-01 86.9% 52.8%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 49.0 3.91e-01 84.8% 51.0%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 51.0 3.81e-01 87.9% 40.4%
3235531 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.63 52.0 3.85e-01 87.9% 40.8%
3225229 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 48.0 3.60e-01 81.8% 40.0%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 49.0 3.69e-01 84.8% 38.4%
4529236 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.63 45.0 3.27e-01 74.7% 63.0%
3787933 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 44.0 3.74e-01 100.0% 45.6%
3236616 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 52.0 3.79e-01 89.9% 47.4%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 52.0 3.84e-01 90.9% 38.2%
3218627 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 48.0 3.75e-01 82.8% 45.1%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 44.0 3.89e-01 100.0% 51.0%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 52.0 3.75e-01 93.9% 38.8%
3227881 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 49.0 4.12e-01 84.8% 78.2%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 50.0 4.05e-01 86.9% 54.6%
4519248 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 32.0 4.23e-01 84.8% 98.0%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.61 48.0 4.59e-01 84.8% 77.4%
3236787 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.60 46.0 4.31e-01 83.8% 76.2%
3210875 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 47.0 3.49e-01 84.8% 41.5%
3730558 219.1.1.9 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.60 43.0 3.16e-01 74.7% 86.7%
4017595 306.10.1.6 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF28980 0.59 47.0 4.38e-01 84.8% 96.8%
3219284 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.59 46.0 3.42e-01 83.8% 43.8%
4165624 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.58 31.0 3.33e-01 85.9% 57.6%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.58 46.0 4.00e-01 84.8% 94.8%
4938255 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 35.0 3.90e-01 96.0% 75.0%
2029638 71.2.1.2 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like 0.58 42.0 3.19e-01 74.7% 73.1%
3394965 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 44.0 3.50e-01 81.8% 84.5%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.57 44.0 3.12e-01 82.8% 92.7%
4468812 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.57 42.0 3.39e-01 77.8% 82.6%
3751611 10.1.1.77 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1, Laminin_G_2 0.57 44.0 3.38e-01 81.8% 81.9%
3613207 219.1.1.9 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.56 41.0 3.11e-01 77.8% 82.3%
3230619 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 4.20e-01 88.9% 76.2%
3938315 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 45.0 3.53e-01 83.8% 89.3%
5027689 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 34.0 3.74e-01 99.0% 76.2%
3402726 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 41.0 3.25e-01 78.8% 74.8%
3785319 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.54 40.0 4.30e-01 80.8% 90.6%
3847961 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.53 40.0 3.37e-01 80.8% 85.6%
3022412 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 45.0 3.96e-01 94.9% 90.1%