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BK013347.1__DAD54689.1__X__00007
Bact-VirBK013347.1__DAD54689.1__X__00007
Identity
- Accession:
- BK013347 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.80 | 54.0 | 4.51e-01 | 70.3% | 97.2% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.71 | 50.0 | 5.36e-01 | 98.4% | 87.3% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.69 | 59.0 | 4.02e-01 | 100.0% | 27.7% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 47.0 | 4.56e-01 | 82.8% | 98.6% |
| 5i0hA02 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 43.0 | 4.20e-01 | 76.6% | 98.6% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 45.0 | 4.21e-01 | 81.2% | 79.0% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 38.0 | 3.50e-01 | 100.0% | 50.0% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 41.0 | 4.01e-01 | 75.0% | 83.3% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.66e-01 | 84.4% | 97.4% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 39.0 | 3.00e-01 | 100.0% | 33.1% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 40.0 | 3.26e-01 | 75.0% | 96.7% |
| 1rp0A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 40.0 | 2.84e-01 | 81.2% | 79.2% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 42.0 | 4.19e-01 | 84.4% | 85.3% |
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.52e-01 | 79.7% | 66.7% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 42.0 | 3.92e-01 | 84.4% | 83.7% |
| 4fz2A01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.54 | 36.0 | 3.49e-01 | 70.3% | 60.0% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.61e-01 | 78.1% | 73.2% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 41.0 | 3.60e-01 | 85.9% | 62.6% |
| 3hunA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 37.0 | 2.51e-01 | 76.6% | 35.2% |
| 1c4kA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 41.0 | 3.08e-01 | 89.1% | 90.0% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 39.0 | 3.79e-01 | 82.8% | 84.9% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 40.0 | 3.22e-01 | 84.4% | 57.9% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.52 | 41.0 | 3.58e-01 | 85.9% | 56.7% |
| 2irpA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.51 | 42.0 | 3.10e-01 | 100.0% | 60.2% |
| 4rdrA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.51 | 34.0 | 2.89e-01 | 71.9% | 71.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970860 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.81 | 73.0 | 7.27e-01 | 100.0% | 96.9% |
| 4982888 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.79 | 66.0 | 6.82e-01 | 95.3% | 96.7% |
| 5070539 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.75 | 60.0 | 6.37e-01 | 96.9% | 100.0% |
| 5083361 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.74 | 59.0 | 6.29e-01 | 95.3% | 100.0% |
| 4968437 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.74 | 62.0 | 6.38e-01 | 98.4% | 96.7% |
| 5072746 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.73 | 60.0 | 6.19e-01 | 93.8% | 96.7% |
| 2526413 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.72 | 66.0 | 5.92e-01 | 100.0% | 87.2% |
| 3416864 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.70 | 62.0 | 5.91e-01 | 98.4% | 92.0% |
| 3396475 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 56.0 | 5.18e-01 | 90.6% | 85.0% |
| 3789677 | 242.3.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I | 0.66 | 46.0 | 3.51e-01 | 75.0% | 32.3% |
| 3402800 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.65 | 58.0 | 5.51e-01 | 98.4% | 94.7% |
| 4874450 | 182.1.2.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › PF26466 | 0.65 | 58.0 | 3.90e-01 | 100.0% | 28.0% |
| 3632463 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.64 | 48.0 | 3.97e-01 | 82.8% | 53.3% |
| 3396318 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.63 | 55.0 | 5.14e-01 | 98.4% | 88.7% |
| 3730806 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.63 | 48.0 | 3.92e-01 | 84.4% | 52.0% |
| 4223331 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.59 | 43.0 | 3.72e-01 | 78.1% | 78.1% |
| 3502500 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.58 | 44.0 | 3.28e-01 | 84.4% | 30.3% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 41.0 | 3.98e-01 | 76.6% | 73.3% |
| None | — | 0.57 | 41.0 | 2.74e-01 | 79.7% | 67.2% | |
| 4185652 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.56 | 43.0 | 2.82e-01 | 81.2% | 70.0% |
| 5064068 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.56 | 39.0 | 3.91e-01 | 75.0% | 70.8% |
| 3926287 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 38.0 | 2.38e-01 | 70.3% | 32.9% |
| 3670532 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 42.0 | 2.68e-01 | 81.2% | 62.5% |
| None | — | 0.55 | 48.0 | 3.09e-01 | 95.3% | 90.2% | |
| 4636556 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.55 | 38.0 | 2.46e-01 | 73.4% | 93.8% |
| 5051484 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.55 | 40.0 | 3.09e-01 | 78.1% | 60.7% |
| 54696 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 38.0 | 2.46e-01 | 73.4% | 89.9% |
| 4956946 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 43.0 | 2.75e-01 | 92.2% | 16.6% |
| 4061305 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 42.0 | 2.82e-01 | 85.9% | 75.0% |
| 4564141 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 38.0 | 2.43e-01 | 71.9% | 16.1% |
| 3478448 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 42.0 | 4.32e-01 | 90.6% | 91.7% |
| 4884 | 4019.1.1.2 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 | 0.53 | 38.0 | 3.20e-01 | 79.7% | 77.9% |
| 3245966 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.53 | 42.0 | 3.32e-01 | 87.5% | 59.3% |
| 4057787 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.53 | 35.0 | 2.94e-01 | 100.0% | 41.9% |
| 5007175 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.53 | 39.0 | 4.04e-01 | 92.2% | 86.7% |
| None | — | 0.52 | 43.0 | 2.79e-01 | 93.8% | 59.5% | |
| None | — | 0.52 | 42.0 | 2.81e-01 | 93.8% | 64.9% | |
| 4990094 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.51 | 40.0 | 3.93e-01 | 100.0% | 81.4% |
| 137823 | 2003.1.2.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 | 0.51 | 43.0 | 2.82e-01 | 96.9% | 81.4% |
| 4182431 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.51 | 43.0 | 2.72e-01 | 93.8% | 22.2% |