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BK013347.1__DAD54694.1__X__00012

Bact-Vir

BK013347.1__DAD54694.1__X__00012

Identity

Accession:
BK013347 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

TaxID: 2770617

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5aA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.79 55.0 5.35e-01 71.3% 85.3%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.77 54.0 5.16e-01 72.3% 83.3%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.72 54.0 4.78e-01 78.7% 85.2%
1hh2P04 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.67 44.0 5.02e-01 98.9% 92.6%
2rffA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 48.0 4.60e-01 76.6% 72.1%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.66 47.0 4.76e-01 97.9% 76.1%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.65 50.0 4.83e-01 83.0% 79.0%
2cxcA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.65 43.0 4.93e-01 97.9% 94.2%
2nrkA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 49.0 4.06e-01 81.9% 58.2%
1no5B00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 49.0 4.80e-01 84.0% 77.5%
2xr1A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.63 44.0 4.98e-01 74.5% 97.2%
4alzA02 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.63 41.0 4.63e-01 70.2% 92.6%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 39.0 3.48e-01 89.4% 43.4%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.62 50.0 4.75e-01 89.4% 93.9%
2y27A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.61 47.0 4.63e-01 84.0% 80.6%
1gpmA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.61 45.0 4.34e-01 78.7% 90.7%
6vhvA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.60 43.0 4.41e-01 79.8% 77.4%
1ml8A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 46.0 4.60e-01 83.0% 95.9%
3proC02 3.30.300.50 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.60 40.0 4.40e-01 74.5% 91.4%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.60 50.0 4.78e-01 95.7% 80.6%
1sxjE02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 36.0 4.22e-01 94.7% 89.1%
4r0mA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 45.0 4.36e-01 83.0% 77.8%
1ez0A02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.59 44.0 3.53e-01 88.3% 40.0%
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 44.0 4.18e-01 83.0% 96.6%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.58 41.0 4.17e-01 76.6% 74.0%
8gtzA03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 51.0 4.19e-01 100.0% 95.6%
2bh1X00 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.57 34.0 3.78e-01 70.2% 77.9%
3gkuC02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 45.0 4.69e-01 97.9% 91.0%
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 42.0 3.95e-01 81.9% 92.7%
8dpkD01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.56 46.0 3.36e-01 90.4% 98.5%
3bioA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 40.0 3.81e-01 79.8% 63.2%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.55 44.0 3.83e-01 85.1% 100.0%
1f06A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 42.0 3.75e-01 83.0% 63.0%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.54 39.0 3.44e-01 76.6% 65.3%
7r3bE01 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.54 38.0 4.04e-01 74.5% 100.0%
1u9dA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 43.0 4.01e-01 90.4% 75.4%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 42.0 4.07e-01 90.4% 86.9%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.72e-01 98.9% 67.9%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 34.0 3.62e-01 70.2% 79.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046968 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.79 73.0 6.37e-01 100.0% 85.9%
4411671 3261.1.1.2 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st 0.72 46.0 5.38e-01 72.3% 95.4%
4442243 327.1.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › Pro_Al_protease 0.71 46.0 5.24e-01 71.3% 88.6%
3603331 327.4.1.0 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain 0.70 57.0 5.53e-01 89.4% 100.0%
4948129 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.70 47.0 4.61e-01 70.2% 70.5%
4951625 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.69 55.0 5.73e-01 94.7% 94.1%
4979404 327.11.1.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 0.69 50.0 4.31e-01 100.0% 50.7%
4056205 327.1.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › Pro_Al_protease 0.68 44.0 5.03e-01 72.3% 93.8%
4938037 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 49.0 4.76e-01 75.5% 75.2%
4941550 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 49.0 4.57e-01 76.6% 70.0%
3588613 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.68 49.0 5.43e-01 100.0% 97.3%
4029968 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.68 55.0 5.28e-01 89.4% 85.5%
5030716 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.67 49.0 4.72e-01 78.7% 71.8%
3178454 131.1.1.27 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › RTG2_C 0.66 59.0 4.59e-01 100.0% 98.6%
4993097 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.66 49.0 4.71e-01 80.9% 67.3%
4940572 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 48.0 3.94e-01 76.6% 46.9%
3960824 327.11.1.7 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd 0.66 44.0 5.01e-01 98.9% 92.9%
3602517 327.13.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.66 44.0 4.73e-01 98.9% 81.2%
4037140 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.65 53.0 5.22e-01 88.3% 85.0%
4948118 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.65 44.0 4.31e-01 70.2% 67.6%
5014917 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.65 44.0 4.98e-01 71.3% 100.0%
3056798 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 43.0 4.83e-01 72.3% 96.9%
4932832 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.65 42.0 4.84e-01 71.3% 96.9%
1563557 3261.1.1.6 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › CdsD_PD2 0.64 42.0 4.80e-01 70.2% 97.0%
1565126 3261.1.1.7 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › CdsD_PD1 0.64 41.0 4.65e-01 73.4% 93.8%
4123589 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.63 54.0 3.60e-01 94.7% 28.6%
4140697 2003.1.5.213 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr 0.63 54.0 3.64e-01 94.7% 30.7%
4015553 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.63 45.0 4.57e-01 80.9% 75.8%
3947813 316.1.1.46 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SseB_C 0.63 47.0 4.66e-01 85.1% 76.0%
4949400 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.62 47.0 4.33e-01 84.0% 62.5%
5028445 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.62 46.0 4.41e-01 78.7% 72.2%
3987781 327.13.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.62 44.0 4.69e-01 76.6% 88.7%
5050305 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.62 45.0 4.02e-01 76.6% 56.3%
3450898 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.62 46.0 4.89e-01 81.9% 93.8%
5009414 327.5.1.3 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 0.62 45.0 4.60e-01 98.9% 81.1%
3253750 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.61 45.0 4.77e-01 85.1% 92.5%
3979017 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.61 41.0 4.51e-01 100.0% 88.0%
4324633 327.11.1.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 0.61 49.0 4.55e-01 89.4% 85.0%
4100012 327.13.1.5 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH 0.61 49.0 4.62e-01 90.4% 90.7%
4033978 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.60 43.0 4.37e-01 79.8% 75.8%
5050782 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.60 42.0 3.83e-01 100.0% 54.4%
4441923 327.10.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.60 46.0 4.35e-01 83.0% 79.1%
3539067 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.60 45.0 4.73e-01 81.9% 93.8%
5047895 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.60 45.0 4.58e-01 97.9% 81.1%
2636487 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.60 45.0 4.45e-01 97.9% 76.8%
5014287 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.60 46.0 4.74e-01 90.4% 87.8%
4954525 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.59 44.0 4.50e-01 81.9% 83.3%
4943571 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.59 40.0 4.43e-01 74.5% 94.3%
3606291 327.10.1.12 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 0.59 45.0 4.42e-01 85.1% 77.0%
3480890 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 42.0 4.40e-01 80.9% 84.7%
3597666 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.59 42.0 4.32e-01 85.1% 80.0%
3577257 327.2.1.1 a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.58 46.0 4.59e-01 100.0% 81.0%
4215086 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 47.0 4.32e-01 90.4% 74.6%
3608263 327.10.1.12 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 0.58 41.0 4.43e-01 85.1% 92.0%
5005780 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.58 49.0 4.80e-01 97.9% 84.8%
3884000 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 42.0 4.31e-01 81.9% 81.1%
5043702 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.57 40.0 3.86e-01 98.9% 62.7%
4379426 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.57 42.0 4.30e-01 81.9% 83.3%
3214730 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.57 41.0 4.32e-01 77.7% 87.1%
4599345 327.10.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.57 44.0 4.17e-01 84.0% 80.9%
3988694 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.57 41.0 4.22e-01 81.9% 81.1%
3381186 315.1.1.8 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF3783 0.55 46.0 4.19e-01 90.4% 83.2%
4137501 327.10.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.55 43.0 4.07e-01 85.1% 79.1%
4977836 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.55 46.0 3.18e-01 100.0% 24.3%
3641547 327.10.1.9 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N-like_STI 0.55 43.0 4.41e-01 87.2% 90.0%
4134967 327.12.1.1 a+b two layers › Alpha-lytic protease prodomain-like › UbiD C-terminal domain-like › UbiD C-terminal domain-like › UbiD_C 0.52 38.0 2.81e-01 79.8% 27.2%