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BK013347.1__DAD54720.1__X__00038

Bact-Vir

BK013347.1__DAD54720.1__X__00038

Identity

Accession:
BK013347 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

TaxID: 2770617

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-29_94-218
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01930.24 best Cas_Cas4 27.2 5.30e-06 96.1% 68.1%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.83 77.0 7.00e-01 98.1% 97.4%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.81 68.0 6.00e-01 88.3% 95.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.80 76.0 6.80e-01 100.0% 88.3%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.79 73.0 6.57e-01 98.1% 93.7%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.77 72.0 5.90e-01 100.0% 91.0%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.73 58.0 5.05e-01 83.1% 80.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005260 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.86 79.0 6.47e-01 96.1% 90.4%
4028354 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.86 82.0 6.53e-01 100.0% 98.6%
4942551 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.86 82.0 7.10e-01 100.0% 91.4%
3976411 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.85 71.0 5.90e-01 87.7% 92.9%
5005960 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.84 79.0 7.33e-01 98.1% 99.5%
4314348 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.84 78.0 7.20e-01 98.1% 100.0%
5076203 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.84 79.0 7.19e-01 99.4% 96.4%
3288745 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.83 63.0 5.67e-01 78.6% 99.0%
4947545 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.82 77.0 7.09e-01 98.1% 100.0%
4365754 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.82 77.0 6.94e-01 99.4% 99.5%
5012863 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.82 75.0 6.85e-01 96.8% 100.0%
4928680 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 77.0 7.10e-01 99.4% 87.4%
3839909 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.81 77.0 6.32e-01 99.4% 98.1%
5000157 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.81 77.0 6.94e-01 99.4% 89.5%
5066595 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.81 76.0 6.98e-01 99.4% 100.0%
4046812 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.81 76.0 7.00e-01 98.7% 99.5%
4960194 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.81 76.0 6.22e-01 100.0% 95.8%
4955137 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.81 75.0 7.10e-01 98.7% 98.9%
222168 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.80 76.0 6.80e-01 100.0% 88.3%
4932093 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.80 76.0 6.23e-01 100.0% 98.8%
4555637 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.80 73.0 6.94e-01 97.4% 100.0%
3761598 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.80 74.0 5.72e-01 98.1% 96.8%
3574786 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.79 74.0 5.91e-01 100.0% 100.0%
3837602 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 74.0 5.80e-01 100.0% 87.9%
5012280 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.79 74.0 6.62e-01 99.4% 99.5%
3744035 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.79 73.0 5.97e-01 98.7% 96.2%
3666060 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.78 73.0 5.76e-01 98.7% 96.6%
3689992 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 74.0 5.82e-01 100.0% 96.3%
3226148 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.78 73.0 5.82e-01 99.4% 97.9%
3992384 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.77 62.0 5.41e-01 83.1% 99.1%
4242672 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 70.0 6.38e-01 96.8% 100.0%
1311130 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.77 72.0 5.90e-01 100.0% 91.0%
5082574 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 68.0 6.75e-01 96.1% 100.0%
4930402 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 60.0 5.69e-01 81.8% 93.7%
4107642 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.74 70.0 5.66e-01 100.0% 96.7%
4950791 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.73 51.0 4.91e-01 71.4% 94.3%
5075190 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.72 66.0 6.50e-01 96.8% 100.0%
5041156 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 57.0 5.62e-01 82.5% 100.0%
5063524 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.71 66.0 6.51e-01 100.0% 100.0%
3238522 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.69 58.0 4.54e-01 89.0% 65.7%
4946846 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.69 64.0 6.24e-01 100.0% 98.8%
3499164 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 57.0 4.51e-01 89.0% 73.5%
4967158 327.7.1.19 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › Cas_Cas4 0.66 46.0 5.31e-01 77.3% 95.7%
3628154 2008.1.1.91 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.65 54.0 4.24e-01 88.3% 66.5%
3393164 2008.1.1.91 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.63 57.0 4.26e-01 99.4% 63.1%
5073164 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 46.0 4.10e-01 76.0% 74.0%
4260673 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.62 36.0 3.76e-01 70.8% 61.9%
3580762 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 55.0 4.67e-01 100.0% 77.9%
3617935 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 46.0 4.44e-01 98.1% 93.7%
D2 medium residues 30-93
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.74 52.0 5.16e-01 75.0% 100.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 56.0 4.86e-01 84.4% 62.6%
4xb1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.70 57.0 4.37e-01 85.9% 56.7%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.69 59.0 5.36e-01 96.9% 74.2%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.69 56.0 4.73e-01 90.6% 79.1%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 56.0 4.29e-01 92.2% 96.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.92e-01 81.2% 96.9%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.85e-01 82.8% 100.0%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.65 51.0 4.44e-01 93.8% 56.2%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.65 46.0 3.46e-01 75.0% 66.9%
4mcwA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.65 52.0 3.83e-01 93.8% 37.3%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.64 46.0 3.87e-01 76.6% 64.0%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 44.0 3.52e-01 73.4% 43.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 50.0 4.71e-01 89.1% 100.0%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.08e-01 82.8% 70.6%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 41.0 3.16e-01 70.3% 39.9%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 50.0 4.38e-01 98.4% 71.2%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.23e-01 85.9% 63.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.71e-01 85.9% 87.3%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.58 44.0 4.42e-01 93.8% 79.4%
6ddnA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 43.0 3.35e-01 81.2% 73.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.27e-01 87.5% 73.7%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 43.0 3.90e-01 84.4% 59.3%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.57 42.0 3.80e-01 79.7% 78.4%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.37e-01 84.4% 52.5%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 37.0 3.51e-01 71.9% 69.6%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 46.0 3.68e-01 100.0% 56.3%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 34.0 3.16e-01 70.3% 54.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4299521 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.80 74.0 5.46e-01 100.0% 49.3%
4964648 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.79 71.0 4.74e-01 100.0% 31.9%
3932714 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.79 63.0 5.63e-01 87.5% 74.4%
3999666 4230.1.1.7 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.78 62.0 5.86e-01 98.4% 73.3%
4941605 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.77 47.0 5.73e-01 79.7% 100.0%
3269593 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.75 58.0 5.44e-01 84.4% 81.2%
3806242 103.1.1.56 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 0.70 50.0 4.75e-01 75.0% 90.7%
3627089 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 54.0 5.07e-01 87.5% 83.7%
3830185 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.68 55.0 5.69e-01 92.2% 100.0%
3274085 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 53.0 5.15e-01 85.9% 84.3%
3212897 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.66 52.0 5.05e-01 90.6% 82.7%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.66 51.0 5.11e-01 85.9% 81.5%
5061261 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.64 54.0 5.45e-01 98.4% 100.0%
3614721 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 48.0 4.23e-01 84.4% 85.3%
3278561 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.61 45.0 4.08e-01 81.2% 65.6%
3433802 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 45.0 4.02e-01 92.2% 56.0%
3769667 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 46.0 3.92e-01 85.9% 92.4%
4994339 601.5.1.0 alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein 0.55 44.0 4.29e-01 90.6% 98.6%