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BK059895.1__DAZ90880.1__Cy-LDV1_g06__00006

Bact-Vir

BK059895.1__DAZ90880.1__Cy-LDV1_g06__00006

Identity

Accession:
BK059895 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cyanophage_Cy-LDV1

TaxID: 2916630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-42_142-207
PDB
Domain cluster: rep: ON453901.1__WAK79567.1__X__00040__D22-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02924.20 best HDPD 81.6 6.70e-23 97.9% 89.7%
D2 high residues 43-133
PDB
Domain cluster: rep: MH727593.1__AXY83375.1__X__00058__D47-136
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.72 37.0 4.01e-01 94.5% 57.7%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 38.0 4.41e-01 94.5% 87.5%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 43.0 4.09e-01 71.4% 97.2%
2x29A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.70e-01 76.9% 93.6%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 35.0 4.14e-01 79.1% 91.4%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 4.21e-01 76.9% 75.6%
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 40.0 3.48e-01 70.3% 97.1%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 40.0 3.58e-01 71.4% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 33.0 3.83e-01 93.4% 82.0%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.58 40.0 2.87e-01 71.4% 77.9%
2nn6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.61e-01 72.5% 54.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.57 50.0 4.87e-01 100.0% 88.3%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 39.0 2.96e-01 73.6% 90.6%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.53e-01 76.9% 53.5%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 39.0 2.91e-01 73.6% 79.1%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 34.0 3.90e-01 82.4% 90.2%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 43.0 3.74e-01 85.7% 79.7%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.55 45.0 3.24e-01 92.3% 97.6%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 4.09e-01 78.0% 91.0%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.53 43.0 4.08e-01 98.9% 74.3%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 45.0 3.75e-01 95.6% 93.9%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.05e-01 73.6% 53.0%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.52 37.0 3.23e-01 74.7% 87.4%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 46.0 3.51e-01 100.0% 96.3%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.09e-01 100.0% 99.7%
1dglA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.96e-01 84.6% 82.7%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.87e-01 89.0% 83.0%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 33.0 3.09e-01 71.4% 54.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2409295 3943.1.1.3 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 0.76 69.0 6.86e-01 98.9% 95.7%
4082596 3943.1.1.0 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.70 54.0 5.84e-01 97.8% 100.0%
3457922 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.65 42.0 3.49e-01 76.9% 37.5%
1509336 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 36.0 3.95e-01 94.5% 67.1%
1075289 2.4.1.5 ↗ beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.62 35.0 3.99e-01 78.0% 75.0%
5042801 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 3.72e-01 76.9% 48.5%
3505078 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.01e-01 76.9% 61.9%
5015458 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 38.0 4.01e-01 93.4% 72.5%
1524863 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.59 38.0 3.91e-01 82.4% 68.6%
5011984 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 42.0 3.82e-01 73.6% 66.7%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 36.0 4.05e-01 93.4% 80.0%
5035593 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 37.0 3.54e-01 100.0% 54.3%
4436471 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 41.0 3.89e-01 73.6% 81.0%
4975453 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 45.0 3.68e-01 85.7% 100.0%
5039364 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 33.0 3.33e-01 100.0% 57.8%
4311691 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 35.0 3.14e-01 82.4% 43.7%
4446834 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 39.0 3.65e-01 75.8% 74.3%
4371270 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 36.0 3.62e-01 73.6% 81.1%
3537641 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.51 38.0 2.59e-01 80.2% 47.9%
4327245 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 33.0 2.93e-01 100.0% 43.6%
4123140 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 36.0 3.46e-01 75.8% 82.4%
4547794 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.50 37.0 3.35e-01 78.0% 82.8%
3416381 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.50 41.0 2.74e-01 89.0% 30.7%