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BK059895.1__DAZ90896.1__Cy-LDV1_g22__00022
Bact-VirBK059895.1__DAZ90896.1__Cy-LDV1_g22__00022
Identity
- Accession:
- BK059895 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-59
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kb9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.78 | 66.0 | 4.02e-01 | 92.7% | 41.8% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.74 | 52.0 | 4.16e-01 | 74.5% | 39.3% |
| 5cs2A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.70 | 53.0 | 3.86e-01 | 80.0% | 90.5% |
| 4nv1E01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.65 | 53.0 | 3.72e-01 | 92.7% | 41.9% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 43.0 | 3.43e-01 | 76.4% | 35.5% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 45.0 | 3.66e-01 | 92.7% | 38.2% |
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 52.0 | 3.25e-01 | 100.0% | 16.7% |
| 3cvjC00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 48.0 | 3.23e-01 | 89.1% | 71.4% |
| 2wg7A00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.62 | 49.0 | 3.81e-01 | 87.3% | 59.5% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.62 | 51.0 | 3.05e-01 | 92.7% | 70.0% |
| 1e6dM01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.62 | 57.0 | 4.09e-01 | 100.0% | 53.1% |
| 1qlbA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.61 | 52.0 | 4.10e-01 | 96.4% | 78.8% |
| 2x5eA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.60 | 43.0 | 2.77e-01 | 87.3% | 17.0% |
| 5uaiA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.59 | 46.0 | 3.27e-01 | 92.7% | 38.8% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.58 | 46.0 | 3.30e-01 | 94.5% | 93.3% |
| 2xvlA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 42.0 | 2.60e-01 | 83.6% | 94.2% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 42.0 | 3.22e-01 | 81.8% | 66.4% |
| 1wbeA01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.55 | 48.0 | 3.33e-01 | 98.2% | 83.8% |
| 3q6oA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 38.0 | 3.08e-01 | 80.0% | 77.7% |
| 3jb9X01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 2.74e-01 | 83.6% | 70.3% |
| 3fmwC03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.54 | 38.0 | 3.06e-01 | 76.4% | 61.4% |
| 3t38A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 44.0 | 3.32e-01 | 90.9% | 83.6% |
| 2wtvA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 40.0 | 2.91e-01 | 89.1% | 65.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2724318 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.85 | 61.0 | 4.46e-01 | 74.5% | 83.1% |
| 3276479 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.79 | 63.0 | 4.18e-01 | 85.5% | 25.9% |
| 3911722 | 3755.3.1.406 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tweety | 0.72 | 58.0 | 3.74e-01 | 85.5% | 58.2% |
| 3357805 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.69 | 54.0 | 4.89e-01 | 85.5% | 80.0% |
| 5065450 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 52.0 | 3.80e-01 | 83.6% | 41.9% |
| 4970367 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.68 | 53.0 | 3.72e-01 | 83.6% | 47.9% |
| 3615409 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.68 | 59.0 | 4.65e-01 | 92.7% | 53.3% |
| 3957478 | 323.1.1.11 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PapA_C | 0.67 | 49.0 | 3.51e-01 | 78.2% | 52.5% |
| 3920955 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.64 | 57.0 | 3.72e-01 | 100.0% | 53.1% |
| 3958242 | 885.1.1.0 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain | 0.62 | 53.0 | 4.29e-01 | 92.7% | 100.0% |
| 4138476 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.62 | 47.0 | 3.79e-01 | 83.6% | 85.5% |
| 3597807 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 49.0 | 3.81e-01 | 92.7% | 76.9% |
| 4306716 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.53 | 40.0 | 2.42e-01 | 83.6% | 28.5% |
| 3987428 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.53 | 49.0 | 3.92e-01 | 100.0% | 63.0% |