Back to structures

BK061308.1__DAZ89904.1__PROPHIFSAT01-1_15__00015

Bact-Vir

BK061308.1__DAZ89904.1__PROPHIFSAT01-1_15__00015

Identity

Accession:
BK061308 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-39_100-243
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zyuA01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.75 72.0 6.67e-01 100.0% 95.0%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.73 45.0 5.64e-01 83.1% 100.0%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.71 67.0 6.05e-01 100.0% 86.8%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.71 42.0 4.82e-01 84.3% 79.2%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.71 59.0 5.34e-01 87.3% 90.0%
1w36B05 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.70 62.0 5.11e-01 93.4% 94.8%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 41.0 4.71e-01 81.3% 82.4%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 37.0 4.20e-01 82.5% 74.2%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.62 55.0 5.18e-01 92.8% 79.0%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.61 54.0 4.99e-01 92.8% 76.8%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.61 56.0 5.04e-01 99.4% 88.9%
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.61 48.0 4.41e-01 94.0% 64.2%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.60 57.0 5.38e-01 100.0% 85.6%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 40.0 3.91e-01 80.1% 61.4%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.55 36.0 4.21e-01 78.9% 98.2%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 35.0 3.74e-01 83.7% 74.0%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 39.0 4.17e-01 78.9% 85.9%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 38.0 3.99e-01 82.5% 83.6%
3odhA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.50 34.0 3.31e-01 72.3% 58.2%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221910 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.83 79.0 6.67e-01 100.0% 92.3%
3480310 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 77.0 6.80e-01 98.2% 91.6%
3629495 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 77.0 6.28e-01 100.0% 87.9%
4876381 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.81 63.0 6.63e-01 86.7% 86.9%
4002824 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.81 77.0 6.20e-01 100.0% 86.8%
3614493 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 75.0 6.06e-01 100.0% 99.3%
2439587 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.78 71.0 6.23e-01 94.6% 80.7%
4969306 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 70.0 5.88e-01 95.2% 77.7%
4290285 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 73.0 6.31e-01 100.0% 83.7%
4938605 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.77 69.0 6.01e-01 93.4% 88.1%
3226148 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.77 69.0 5.63e-01 94.0% 77.2%
4324924 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 65.0 6.52e-01 88.0% 100.0%
5021943 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 69.0 6.02e-01 95.2% 85.4%
5063088 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 67.0 5.48e-01 94.0% 77.2%
4414555 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 63.0 5.30e-01 87.3% 85.7%
4389411 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 62.0 5.26e-01 87.3% 81.7%
4457776 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.74 62.0 5.22e-01 86.7% 86.2%
4387318 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.74 62.0 5.45e-01 87.3% 89.8%
4047845 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.74 61.0 5.33e-01 86.1% 84.6%
4501322 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 66.0 5.84e-01 94.0% 97.8%
4477991 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.74 62.0 5.32e-01 86.7% 87.8%
4959669 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 66.0 5.72e-01 94.6% 88.7%
4953680 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 65.0 5.50e-01 93.4% 86.5%
4966546 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 65.0 5.47e-01 94.0% 84.7%
4936773 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 65.0 5.54e-01 94.0% 87.1%
4670340 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.73 49.0 5.86e-01 83.7% 100.0%
4060516 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.73 50.0 5.86e-01 83.7% 100.0%
5021023 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.72 63.0 5.43e-01 92.8% 88.8%
4058806 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 60.0 5.01e-01 88.6% 84.6%
4242672 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 64.0 5.95e-01 93.4% 85.0%
4031223 2008.1.1.204 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 0.71 63.0 5.42e-01 94.0% 82.0%
4955851 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 41.0 3.87e-01 81.3% 48.0%
4955137 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.71 60.0 5.87e-01 98.2% 82.2%
5022819 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.70 40.0 4.76e-01 82.5% 81.7%
5003779 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 64.0 5.42e-01 99.4% 87.2%
4282858 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 61.0 3.58e-01 92.8% 47.7%
4953503 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.68 43.0 4.05e-01 80.7% 52.0%
5005960 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.67 59.0 5.68e-01 95.2% 82.6%
4968936 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.67 60.0 5.48e-01 94.6% 82.3%
4929251 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.67 60.0 5.75e-01 100.0% 82.6%
3506045 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 42.0 4.12e-01 78.3% 56.8%
4046812 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.67 59.0 5.61e-01 98.2% 81.1%
4209016 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 44.0 3.97e-01 78.9% 48.7%
5060524 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.66 58.0 5.39e-01 92.8% 82.4%
4411889 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 43.0 3.94e-01 78.9% 50.0%
4947545 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.66 59.0 5.59e-01 94.6% 83.2%
4983658 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.65 44.0 4.70e-01 82.5% 77.9%
5042023 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.65 58.0 5.57e-01 94.6% 82.6%
5080245 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.65 57.0 5.43e-01 92.2% 82.1%
5076203 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.64 58.0 5.44e-01 97.0% 80.5%
5031791 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.64 37.0 4.58e-01 81.9% 89.5%
4555637 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.64 53.0 5.20e-01 92.2% 80.6%
5045797 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.64 56.0 5.32e-01 95.2% 80.5%
4958431 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 39.0 4.54e-01 80.1% 88.7%
5046037 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 58.0 5.09e-01 100.0% 95.7%
2798007 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.61 56.0 5.27e-01 98.2% 80.8%
5074941 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 35.0 4.17e-01 80.1% 83.6%
4954341 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.61 57.0 5.16e-01 99.4% 84.2%
4955243 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 37.0 3.57e-01 82.5% 53.0%
4999640 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.60 54.0 4.94e-01 95.2% 86.2%
3647811 2008.1.1.50 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ 0.60 55.0 4.73e-01 98.8% 72.4%
3714866 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 43.0 4.41e-01 74.7% 100.0%
5051064 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 55.0 4.84e-01 100.0% 96.2%
4998336 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.58 45.0 4.80e-01 81.3% 95.9%
3813800 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.57 44.0 4.59e-01 78.3% 87.3%
3338602 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.57 44.0 4.28e-01 80.1% 73.0%
4941226 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 32.0 3.55e-01 80.1% 68.2%
4941784 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 37.0 4.09e-01 81.9% 80.7%
3800850 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 43.0 4.16e-01 80.1% 86.8%
4955318 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.56 38.0 4.27e-01 76.5% 89.1%
5011096 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 42.0 4.65e-01 86.7% 96.3%
3578270 2008.1.1.94 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 0.56 43.0 4.12e-01 80.1% 86.8%
5044802 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 42.0 3.88e-01 77.7% 84.3%
3604181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 40.0 3.73e-01 75.3% 93.0%
3924502 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 42.0 3.55e-01 79.5% 54.4%
5010218 2008.1.1.219 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.55 36.0 4.12e-01 79.5% 91.7%
5053367 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 37.0 4.10e-01 83.1% 87.7%
4676615 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.54 40.0 3.39e-01 75.3% 83.3%
5032419 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 3.93e-01 81.3% 79.5%
3932248 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 39.0 4.28e-01 75.3% 95.7%
4952470 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 39.0 4.08e-01 78.9% 81.9%
5057728 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 38.0 4.33e-01 79.5% 99.2%
4150493 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 44.0 4.04e-01 89.8% 79.9%
4525524 2008.1.1.164 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26568 0.53 36.0 3.59e-01 81.3% 65.7%
3262617 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 34.0 4.12e-01 72.9% 100.0%
3102571 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 38.0 4.05e-01 78.9% 93.0%
4959556 2008.1.1.219 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.50 33.0 3.84e-01 78.9% 95.7%
D2 high residues 42-89
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m56C01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 42.0 3.69e-01 97.9% 44.9%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 43.0 3.28e-01 91.7% 29.4%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.67 44.0 3.27e-01 77.1% 27.7%
4l9aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 55.0 3.47e-01 100.0% 92.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 45.0 3.75e-01 87.5% 43.5%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.44e-01 83.3% 36.6%
2e5zA01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.63 42.0 3.90e-01 83.3% 55.9%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 3.84e-01 91.7% 50.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 46.0 3.47e-01 81.2% 34.7%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.61 38.0 3.75e-01 77.1% 60.8%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 40.0 3.25e-01 87.5% 34.3%
2pgsA03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.56 43.0 3.52e-01 89.6% 100.0%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 44.0 3.82e-01 87.5% 56.2%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.56 41.0 3.63e-01 79.2% 70.6%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 43.0 3.87e-01 95.8% 93.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.52 38.0 3.50e-01 91.7% 59.4%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 45.0 3.10e-01 100.0% 80.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987339 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 45.0 3.55e-01 79.2% 31.6%
5014267 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.69 51.0 4.61e-01 83.3% 80.0%
4951259 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.68 53.0 3.83e-01 89.6% 61.4%
4284121 1008.1.1.59 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Bac_export_2 0.67 48.0 3.15e-01 87.5% 18.0%
4971327 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.63 50.0 3.34e-01 89.6% 58.5%
3591699 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.62 52.0 4.22e-01 97.9% 85.0%
3944950 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 44.0 3.96e-01 77.1% 89.2%
4031338 605.1.1.304 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF443 0.59 47.0 3.65e-01 91.7% 71.3%
3990062 160.1.1.0 alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.58 47.0 3.95e-01 100.0% 72.6%
4152141 5041.1.1.14 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Bac_export_2 0.54 45.0 2.99e-01 95.8% 31.6%
D3 high residues 264-308
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.90 81.0 6.62e-01 100.0% 65.8%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.88 66.0 5.34e-01 80.0% 45.7%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.84 73.0 4.71e-01 100.0% 31.8%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.81 71.0 4.95e-01 100.0% 32.7%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.78 68.0 4.68e-01 100.0% 77.4%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.76 63.0 5.51e-01 100.0% 72.6%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.71 59.0 5.05e-01 97.8% 85.9%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.70 59.0 4.26e-01 95.6% 48.8%
3onqA01 1.20.5.5100 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 57.0 5.84e-01 91.1% 97.6%
7cqnC01 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.69 59.0 3.56e-01 100.0% 97.2%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.68 56.0 3.97e-01 91.1% 82.1%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.68 59.0 5.14e-01 100.0% 75.7%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.68 59.0 5.18e-01 100.0% 77.9%
3bulA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 54.0 4.59e-01 100.0% 87.4%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.67 57.0 5.08e-01 100.0% 79.1%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.67 54.0 3.85e-01 100.0% 67.1%
2cz2A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 57.0 4.20e-01 100.0% 59.5%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 56.0 4.45e-01 97.8% 47.9%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 54.0 3.98e-01 100.0% 79.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 52.0 4.43e-01 100.0% 77.6%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.64 50.0 4.59e-01 97.8% 71.6%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 51.0 3.86e-01 97.8% 79.7%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 52.0 3.97e-01 100.0% 81.8%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 52.0 3.90e-01 100.0% 76.2%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 51.0 4.21e-01 97.8% 63.8%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 51.0 3.83e-01 100.0% 64.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.63 50.0 4.12e-01 100.0% 84.0%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.63 50.0 4.48e-01 100.0% 68.9%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 50.0 4.01e-01 100.0% 68.9%
2rreA00 1.10.10.2010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 50.0 4.33e-01 95.6% 81.1%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 47.0 3.64e-01 100.0% 76.3%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 48.0 4.35e-01 97.8% 68.7%
2zycA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 44.0 3.45e-01 84.4% 100.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3816578 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.96 90.0 5.65e-01 100.0% 37.9%
3591850 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.95 88.0 7.65e-01 100.0% 73.8%
5045348 604.34.1.0 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.94 88.0 6.91e-01 100.0% 69.4%
3895121 4030.1.1.3 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Exog_C 0.93 85.0 7.51e-01 100.0% 73.0%
3827364 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.92 84.0 5.01e-01 100.0% 25.6%
3438127 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.91 83.0 4.75e-01 100.0% 19.7%
3321758 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.91 82.0 4.51e-01 100.0% 12.8%
3309202 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.90 81.0 5.97e-01 100.0% 70.0%
3808391 109.4.1.775 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.87 78.0 4.78e-01 100.0% 31.8%
3423121 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.87 77.0 4.75e-01 100.0% 19.2%
4030534 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 76.0 4.58e-01 100.0% 16.5%
4029772 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 72.0 4.14e-01 100.0% 10.7%
3347410 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.81 65.0 4.64e-01 91.1% 33.3%
4421321 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.81 73.0 4.93e-01 100.0% 29.7%
3510805 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 70.0 4.92e-01 100.0% 37.2%
3963633 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.80 72.0 4.84e-01 100.0% 28.7%
3429432 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.80 67.0 4.06e-01 100.0% 14.5%
3614573 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 66.0 3.88e-01 97.8% 13.4%
3616011 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.74 62.0 3.80e-01 100.0% 16.8%
4467337 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.74 63.0 4.52e-01 100.0% 68.6%
3541264 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.73 61.0 3.75e-01 100.0% 17.2%
3920949 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.73 61.0 4.11e-01 100.0% 27.8%
4935828 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.71 60.0 4.27e-01 100.0% 68.3%
3268091 109.4.1.150 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.69 57.0 3.10e-01 100.0% 11.2%
4542879 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 51.0 3.62e-01 84.4% 26.2%
3223123 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.67 54.0 4.03e-01 100.0% 46.7%
3988723 109.4.1.428 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2785 0.67 55.0 3.77e-01 100.0% 34.4%
5044421 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.66 59.0 4.85e-01 100.0% 60.0%
3574000 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.66 52.0 3.75e-01 100.0% 36.3%
3702178 129.1.1.16 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.65 54.0 4.05e-01 100.0% 79.2%
5050395 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.62 51.0 4.32e-01 97.8% 63.9%
5050917 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.62 49.0 4.28e-01 97.8% 66.3%
3992032 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 53.0 4.09e-01 100.0% 46.0%
3504908 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.60 51.0 4.02e-01 100.0% 46.0%