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BK061312.1__DAZ90315.1__PROPHIFSQJ01-1_29__00029

Bact-Vir

BK061312.1__DAZ90315.1__PROPHIFSQJ01-1_29__00029

Identity

Accession:
BK061312 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-59
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.89 79.0 6.42e-01 100.0% 95.1%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.78 68.0 5.62e-01 100.0% 100.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.78 66.0 4.51e-01 97.8% 49.7%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.78 66.0 5.75e-01 97.8% 88.7%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 67.0 5.57e-01 100.0% 100.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 62.0 5.07e-01 91.1% 100.0%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.77 65.0 5.71e-01 95.6% 98.5%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 59.0 4.46e-01 88.9% 100.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.74 62.0 5.53e-01 97.8% 74.2%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 59.0 4.92e-01 95.6% 50.0%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.73 60.0 5.03e-01 97.8% 53.0%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 56.0 4.53e-01 100.0% 44.2%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.70 59.0 4.27e-01 97.8% 99.2%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 57.0 4.71e-01 97.8% 95.5%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 56.0 4.76e-01 100.0% 94.2%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.70 56.0 4.77e-01 95.6% 96.3%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.69 54.0 4.50e-01 86.7% 100.0%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 57.0 4.61e-01 100.0% 47.9%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.68 54.0 4.03e-01 100.0% 51.1%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 56.0 4.54e-01 97.8% 77.2%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 53.0 4.43e-01 97.8% 95.6%
3o2sB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 55.0 4.05e-01 100.0% 47.0%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 52.0 4.46e-01 97.8% 51.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.66 56.0 4.66e-01 100.0% 95.2%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 54.0 3.63e-01 95.6% 76.4%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 53.0 4.92e-01 95.6% 72.9%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.39e-01 100.0% 51.6%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 3.88e-01 100.0% 34.4%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 55.0 4.54e-01 100.0% 55.8%
3bpnC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 49.0 4.06e-01 100.0% 44.1%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 51.0 4.41e-01 100.0% 97.6%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 57.0 4.40e-01 100.0% 60.4%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 47.0 3.00e-01 82.2% 59.3%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 49.0 4.25e-01 100.0% 96.4%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 52.0 4.19e-01 100.0% 58.8%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.01e-01 100.0% 45.4%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 3.82e-01 100.0% 45.2%
3gidB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 47.0 4.10e-01 100.0% 53.0%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.61 52.0 4.06e-01 100.0% 52.4%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.61 51.0 3.75e-01 100.0% 58.6%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 50.0 3.63e-01 100.0% 35.4%
3ig5A02 3.30.590.50 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.60 51.0 3.07e-01 100.0% 83.2%
1es7B00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 47.0 4.14e-01 100.0% 83.1%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 3.46e-01 100.0% 73.5%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.60 47.0 3.84e-01 93.3% 58.5%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 42.0 2.75e-01 77.8% 20.9%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 3.44e-01 100.0% 29.3%
1rv9A00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.59 46.0 3.09e-01 100.0% 46.7%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.59 49.0 4.83e-01 97.8% 89.8%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.59 43.0 3.33e-01 84.4% 81.0%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 46.0 4.07e-01 100.0% 85.9%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 43.0 4.05e-01 95.6% 65.6%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.57 45.0 3.82e-01 97.8% 50.6%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 45.0 3.45e-01 93.3% 68.1%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.57 46.0 3.52e-01 100.0% 52.5%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 2.96e-01 97.8% 24.2%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.41e-01 95.6% 42.4%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.22e-01 97.8% 64.7%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.53 44.0 3.78e-01 100.0% 74.4%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 39.0 2.97e-01 97.8% 31.1%
1ghpA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.63e-01 97.8% 85.6%
3qhyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 39.0 2.58e-01 93.3% 54.3%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 39.0 2.80e-01 86.7% 54.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.81 71.0 6.44e-01 97.8% 85.0%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.80 65.0 4.94e-01 93.3% 38.5%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.79 70.0 6.56e-01 100.0% 81.8%
3943075 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.76 63.0 5.39e-01 100.0% 98.8%
4399545 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.75 61.0 4.80e-01 97.8% 100.0%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.75 62.0 4.99e-01 100.0% 46.3%
5007504 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.74 63.0 3.90e-01 100.0% 44.5%
3200782 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 60.0 4.78e-01 100.0% 45.3%
3711192 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.72 61.0 4.54e-01 100.0% 38.2%
3688295 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.72 59.0 4.81e-01 97.8% 49.4%
5042324 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 57.0 4.71e-01 95.6% 54.4%
5080080 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.70 60.0 3.50e-01 100.0% 12.2%
3551231 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.70 59.0 4.60e-01 100.0% 43.8%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.70 59.0 4.12e-01 97.8% 49.7%
3437270 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 55.0 4.89e-01 100.0% 60.0%
4326469 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.69 55.0 4.66e-01 97.8% 98.8%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 56.0 4.88e-01 97.8% 97.3%
3385376 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 56.0 4.20e-01 100.0% 74.4%
3643093 206.1.3.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.67 53.0 3.46e-01 95.6% 77.4%
3535929 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.67 55.0 3.84e-01 100.0% 26.3%
3859590 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.67 55.0 5.41e-01 100.0% 96.0%
5061359 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.67 57.0 3.41e-01 100.0% 13.2%
4024040 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.66 54.0 4.93e-01 100.0% 76.9%
4953966 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.66 50.0 3.16e-01 86.7% 88.3%
4188115 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.66 50.0 2.76e-01 95.6% 4.9%
4156870 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.66 54.0 4.42e-01 100.0% 55.8%
3404684 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.65 55.0 3.63e-01 100.0% 65.7%
3461367 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 52.0 4.28e-01 100.0% 46.3%
3698362 11.1.1.1046 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28431 0.64 53.0 3.86e-01 100.0% 44.4%
4970537 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 4.96e-01 95.6% 97.5%
5000843 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 45.0 3.42e-01 75.6% 35.7%
3998576 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 50.0 3.52e-01 100.0% 27.4%
3701633 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 50.0 4.27e-01 100.0% 52.9%
4399557 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.61 44.0 3.24e-01 75.6% 63.2%
3397134 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 48.0 4.71e-01 97.8% 86.0%
4017272 221.1.1.188 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7767 0.61 49.0 4.07e-01 100.0% 48.4%
3695272 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.61 54.0 3.84e-01 100.0% 43.0%
3782443 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 51.0 3.53e-01 100.0% 28.5%
3172632 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.59 53.0 3.76e-01 100.0% 48.9%
5027281 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.21e-01 100.0% 69.0%
3742175 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.58 51.0 3.87e-01 100.0% 48.2%
3932150 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 47.0 4.09e-01 97.8% 77.3%
3224684 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.57 41.0 2.46e-01 77.8% 19.7%
3644383 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 44.0 3.62e-01 100.0% 43.0%
3319149 224.1.1.3 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.56 40.0 2.91e-01 82.2% 77.4%
3742881 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.56 46.0 3.48e-01 100.0% 51.2%
3193904 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.55 43.0 3.34e-01 100.0% 45.4%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.55 43.0 4.32e-01 93.3% 100.0%
3311407 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 43.0 3.04e-01 100.0% 35.3%
223777 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.50 42.0 3.69e-01 100.0% 66.7%