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BK061477.1__DBA08299.1__X__00006

Bact-Vir

BK061477.1__DBA08299.1__X__00006

Identity

Accession:
BK061477 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PaeS-D14C

TaxID: 2965060

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: rep: MK510993.1__QBI78973.1__X__00019__D4-53
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09048.18 best Cro 73.3 1.70e-20 100.0% 88.1%
PF01381.29 HTH_3 27.0 5.00e-06 73.6% 54.5%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.93 85.0 8.08e-01 100.0% 85.2%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.82 38.0 4.35e-01 100.0% 59.0%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 59.0 5.42e-01 84.9% 75.7%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 41.0 2.64e-01 100.0% 13.3%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 56.0 4.89e-01 79.2% 67.5%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.73 62.0 5.85e-01 98.1% 80.0%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 57.0 5.81e-01 86.8% 96.1%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 61.0 5.67e-01 94.3% 87.7%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 53.0 5.13e-01 86.8% 91.8%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.10e-01 73.6% 78.8%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 59.0 5.45e-01 96.2% 83.3%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 56.0 5.03e-01 94.3% 78.4%
7zviA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 55.0 4.22e-01 94.3% 65.6%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 55.0 5.15e-01 94.3% 86.4%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 56.0 5.19e-01 94.3% 86.4%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 54.0 4.75e-01 94.3% 69.1%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 55.0 5.06e-01 94.3% 83.8%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 55.0 4.67e-01 94.3% 65.9%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 39.0 3.53e-01 81.1% 44.4%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 54.0 4.52e-01 94.3% 62.4%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 53.0 4.98e-01 92.5% 80.3%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 55.0 5.27e-01 94.3% 95.0%
6mfcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 54.0 3.74e-01 100.0% 29.2%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 50.0 4.49e-01 88.7% 69.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 50.0 4.71e-01 90.6% 78.5%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.58e-01 71.7% 72.9%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 52.0 4.38e-01 94.3% 58.1%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.65e-01 71.7% 79.5%
1y7rA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 48.0 3.76e-01 100.0% 40.2%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 45.0 3.03e-01 90.6% 89.5%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.36e-01 73.6% 81.3%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.42e-01 71.7% 78.0%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.43e-01 90.6% 69.2%
1tvzA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 42.0 2.71e-01 83.0% 56.7%
1pkfA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 36.0 2.22e-01 71.7% 63.5%
3mezD00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 45.0 3.61e-01 100.0% 54.5%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 41.0 3.23e-01 86.8% 56.6%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.07e-01 90.6% 37.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2389361 101.1.4.11 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.91 84.0 7.91e-01 100.0% 85.5%
46219 101.1.4.11 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.87 77.0 7.14e-01 100.0% 78.8%
3587618 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 57.0 4.86e-01 81.1% 65.9%
5031888 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 56.0 4.86e-01 79.2% 63.7%
4173167 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 58.0 5.44e-01 83.0% 80.0%
2057229 101.1.4.23 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin 0.74 58.0 5.35e-01 86.8% 84.1%
4970801 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 56.0 4.73e-01 81.1% 60.0%
159227 101.1.4.11 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.73 62.0 5.85e-01 98.1% 80.0%
3588951 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 56.0 5.39e-01 83.0% 86.7%
3945880 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 50.0 4.95e-01 71.7% 69.1%
5049330 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 62.0 4.38e-01 100.0% 41.7%
3011019 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 57.0 5.59e-01 88.7% 93.0%
2776 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 53.0 5.09e-01 86.8% 90.3%
3967547 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 56.0 5.04e-01 92.5% 65.7%
3958941 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 54.0 4.70e-01 94.3% 57.5%
5006645 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.68 52.0 4.99e-01 98.1% 71.7%
164935 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.68 59.0 5.45e-01 96.2% 83.3%
4968599 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 50.0 4.54e-01 81.1% 72.0%
4991511 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 4.62e-01 94.3% 78.9%
4507416 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 56.0 4.42e-01 94.3% 51.8%
3974678 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 56.0 5.24e-01 92.5% 81.5%
2389360 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.66 56.0 5.30e-01 96.2% 86.2%
4979598 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 57.0 5.18e-01 94.3% 77.1%
3977908 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.66 53.0 4.40e-01 90.6% 56.8%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.65 49.0 3.80e-01 81.1% 45.2%
3965549 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.65 55.0 4.89e-01 94.3% 76.0%
4979523 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 57.0 4.70e-01 96.2% 61.1%
2791 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.64 50.0 4.26e-01 88.7% 59.6%
5078550 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 54.0 4.57e-01 96.2% 62.2%
3985012 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.63 54.0 4.82e-01 96.2% 74.7%
4965968 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 49.0 4.85e-01 94.3% 81.8%
4944977 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.63 48.0 3.74e-01 100.0% 36.2%
3589930 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.63 53.0 4.68e-01 92.5% 68.0%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.62 50.0 3.83e-01 86.8% 47.0%
5053876 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 53.0 5.13e-01 94.3% 90.0%
4031257 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 48.0 4.58e-01 86.8% 87.3%
3965368 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.62 48.0 4.28e-01 88.7% 66.3%
4034513 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 52.0 5.01e-01 94.3% 95.0%
3986225 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.61 46.0 3.09e-01 81.1% 35.1%
3753093 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.58 51.0 4.76e-01 98.1% 83.1%
3332301 2485.1.1.20 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like 0.54 47.0 3.81e-01 100.0% 69.5%
4656134 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 41.0 2.46e-01 83.0% 67.4%
4026334 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 47.0 3.63e-01 100.0% 57.5%
5022034 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.52 39.0 2.91e-01 88.7% 76.4%
3928164 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.51 44.0 2.92e-01 100.0% 85.6%