←Back to structures
BK061480.1__DBA08545.1__X__00073
Bact-VirBK061480.1__DBA08545.1__X__00073
Identity
- Accession:
- BK061480 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-175
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.86 | 58.0 | 6.84e-01 | 80.4% | 97.1% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 35.0 | 3.69e-01 | 74.3% | 66.9% |
| 1ofcX04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 34.0 | 4.05e-01 | 75.7% | 95.7% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.53 | 37.0 | 3.67e-01 | 70.9% | 83.0% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.53 | 37.0 | 4.10e-01 | 71.6% | 100.0% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.53 | 33.0 | 3.94e-01 | 76.4% | 98.9% |
| 3cerA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.53 | 40.0 | 3.61e-01 | 77.7% | 88.7% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.53 | 30.0 | 3.79e-01 | 80.4% | 94.3% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.52 | 42.0 | 3.12e-01 | 86.5% | 92.6% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.52 | 43.0 | 4.13e-01 | 88.5% | 94.2% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 31.0 | 3.27e-01 | 83.8% | 66.9% |
| 2eqoA01 | 1.10.418.50 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Microtubule-binding protein MIP-T3 | 0.50 | 29.0 | 3.11e-01 | 70.3% | 62.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978656 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.79 | 59.0 | 6.62e-01 | 82.4% | 99.1% |
| 3989823 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.76 | 67.0 | 6.72e-01 | 93.2% | 95.3% |
| 5010451 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.73 | 52.0 | 5.96e-01 | 83.8% | 97.3% |
| 3704866 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.57 | 40.0 | 3.14e-01 | 71.6% | 98.2% |
| 3963737 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.56 | 45.0 | 3.98e-01 | 86.5% | 75.0% |
| 4176852 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.55 | 45.0 | 3.89e-01 | 86.5% | 69.1% |
| 3934929 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.55 | 32.0 | 3.86e-01 | 83.8% | 86.0% |
| 3994 | 150.3.1.11 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › LIF_OSM | 0.52 | 36.0 | 3.49e-01 | 70.3% | 72.7% |
| 4935725 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.51 | 31.0 | 3.25e-01 | 81.1% | 65.2% |
| 3933280 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.50 | 37.0 | 3.36e-01 | 75.7% | 81.5% |
D2
high
residues 435-550
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 40.0 | 4.85e-01 | 96.6% | 94.9% |
| 2d7lA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.57 | 25.0 | 3.44e-01 | 77.6% | 84.9% |
| 4atgA00 | 1.25.40.770 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain | 0.55 | 45.0 | 3.78e-01 | 91.4% | 52.3% |
| 4c0eA02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 43.0 | 3.52e-01 | 92.2% | 56.4% |
| 2fbaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 43.0 | 2.91e-01 | 94.8% | 41.5% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.51 | 33.0 | 3.35e-01 | 77.6% | 65.5% |
| 1ldjA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.51 | 39.0 | 3.84e-01 | 81.9% | 99.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3894095 | 109.4.1.333 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF5588 | 0.68 | 47.0 | 3.65e-01 | 71.6% | 48.1% |
| 2775146 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.67 | 46.0 | 5.18e-01 | 77.6% | 92.0% |
| 3262584 | 109.4.1.1177 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DDX60 | 0.62 | 48.0 | 3.95e-01 | 80.2% | 85.0% |
| 3543543 | 109.59.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Vps16_N | 0.59 | 37.0 | 4.24e-01 | 75.0% | 87.1% |
| None | — | 0.57 | 47.0 | 3.38e-01 | 93.1% | 30.2% | |
| 3584108 | 109.4.1.2124 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Htt_N-HEAT, Htt_N-HEAT_1 | 0.57 | 48.0 | 2.85e-01 | 94.8% | 18.3% |
| 3449859 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 39.0 | 3.61e-01 | 92.2% | 54.2% |
| 3723732 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 46.0 | 3.96e-01 | 93.1% | 87.5% |
| 3251989 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 39.0 | 2.80e-01 | 80.2% | 24.0% |
| 3678845 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.55 | 44.0 | 2.81e-01 | 88.8% | 17.9% |
| 3594914 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.54 | 45.0 | 3.68e-01 | 90.5% | 53.6% |
| 4012915 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 46.0 | 2.76e-01 | 98.3% | 42.6% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.52 | 36.0 | 3.78e-01 | 84.5% | 79.0% |
| 3245826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.52 | 47.0 | 3.85e-01 | 100.0% | 74.8% |
| 3567914 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.50 | 29.0 | 3.57e-01 | 78.4% | 100.0% |
D3
medium
residues 181-240_287-301_340-413
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.75 | 71.0 | 6.09e-01 | 100.0% | 94.1% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.74 | 69.0 | 6.26e-01 | 100.0% | 99.0% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.72 | 66.0 | 6.23e-01 | 96.6% | 99.4% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.69 | 66.0 | 5.73e-01 | 99.3% | 95.7% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 27.0 | 3.21e-01 | 100.0% | 60.2% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 31.0 | 3.43e-01 | 85.9% | 63.6% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.56 | 32.0 | 3.82e-01 | 86.6% | 84.5% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.52 | 26.0 | 3.19e-01 | 72.5% | 75.0% |
| 8d0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 37.0 | 2.77e-01 | 73.8% | 93.1% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.51 | 25.0 | 3.41e-01 | 71.8% | 97.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083506 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 69.0 | 6.33e-01 | 100.0% | 96.2% |
| 4475168 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 68.0 | 6.13e-01 | 100.0% | 91.8% |
| 4981966 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 68.0 | 6.10e-01 | 100.0% | 92.0% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 64.0 | 6.09e-01 | 95.3% | 100.0% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 61.0 | 5.44e-01 | 90.6% | 87.5% |
| 4637388 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 66.0 | 6.27e-01 | 100.0% | 92.9% |
| 3957445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 29.0 | 3.20e-01 | 86.6% | 63.5% |
| 3319509 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 25.0 | 2.93e-01 | 80.5% | 61.0% |
| 3709846 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 32.0 | 3.13e-01 | 88.6% | 58.7% |