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BK061587.1__DBA08717.1__X__00044

Bact-Vir

BK061587.1__DBA08717.1__X__00044

Identity

Accession:
BK061587 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-101
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.78 69.0 6.40e-01 100.0% 77.7%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.76 55.0 5.61e-01 97.5% 77.9%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.75 69.0 5.26e-01 100.0% 47.2%
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.74 59.0 4.70e-01 94.9% 44.7%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 48.0 5.10e-01 96.2% 76.1%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 54.0 5.50e-01 97.5% 81.8%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.72 45.0 4.73e-01 93.7% 69.4%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 54.0 4.89e-01 100.0% 58.2%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.71 51.0 3.52e-01 100.0% 21.7%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.71 53.0 5.05e-01 96.2% 68.9%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 58.0 5.15e-01 92.4% 66.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.68 58.0 5.59e-01 98.7% 83.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.67 53.0 5.36e-01 100.0% 83.7%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.67 45.0 4.72e-01 92.4% 75.3%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.67 58.0 5.20e-01 94.9% 67.6%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.67 46.0 4.10e-01 96.2% 48.7%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.67 52.0 5.33e-01 97.5% 86.8%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 58.0 5.98e-01 94.9% 98.7%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.52e-01 93.7% 54.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.66 61.0 4.57e-01 100.0% 47.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 52.0 5.18e-01 88.6% 98.8%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 42.0 4.84e-01 81.0% 96.3%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 57.0 4.63e-01 97.5% 89.9%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 58.0 3.99e-01 100.0% 29.8%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 53.0 4.30e-01 91.1% 67.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 47.0 4.14e-01 100.0% 51.3%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.64 51.0 4.49e-01 88.6% 58.7%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 57.0 4.16e-01 100.0% 37.1%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.24e-01 92.4% 57.5%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 47.0 3.77e-01 96.2% 39.2%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 48.0 5.35e-01 87.3% 100.0%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.63 43.0 3.94e-01 91.1% 51.3%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 53.0 4.42e-01 97.5% 54.5%
1z23A00 1.20.120.830 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain 0.61 55.0 4.34e-01 100.0% 84.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.61 53.0 4.96e-01 100.0% 79.4%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 43.0 4.06e-01 82.3% 60.8%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.60 46.0 4.66e-01 82.3% 81.8%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.59 49.0 4.64e-01 100.0% 78.9%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.56 49.0 3.65e-01 97.5% 38.3%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 50.0 4.50e-01 100.0% 82.7%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 36.0 2.96e-01 81.0% 36.1%
4ikhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 39.0 3.41e-01 88.6% 48.0%
6yttA01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.53 43.0 3.93e-01 87.3% 67.0%
4fp4A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 42.0 3.07e-01 88.6% 96.3%
1sg6A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 43.0 3.26e-01 92.4% 83.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017743 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.86 58.0 5.71e-01 100.0% 64.7%
3236134 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.81 68.0 5.05e-01 100.0% 39.4%
3702575 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 67.0 5.73e-01 100.0% 59.1%
3708367 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.80 54.0 5.75e-01 96.2% 78.6%
3669818 3922.1.1.284 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF29520 0.76 54.0 4.04e-01 100.0% 30.5%
3679043 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 61.0 4.72e-01 100.0% 42.5%
4566016 3660.1.1.10 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › Asp5 0.75 55.0 5.80e-01 89.9% 85.7%
3190578 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.73 56.0 4.82e-01 100.0% 52.0%
3547040 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 69.0 5.15e-01 100.0% 45.9%
3207317 192.7.1.23 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › zf-C4pol 0.72 58.0 5.39e-01 92.4% 69.0%
3720094 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.72 62.0 4.30e-01 100.0% 30.0%
4448579 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.19e-01 86.1% 37.6%
4028999 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.71 44.0 4.85e-01 100.0% 76.9%
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.71 67.0 5.09e-01 100.0% 81.8%
4185385 605.2.1.6 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Val_tRNA-synt_C 0.70 45.0 4.70e-01 100.0% 72.9%
3790121 603.1.1.114 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 0.70 51.0 4.75e-01 97.5% 61.0%
3740053 4177.1.1.27 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 0.70 66.0 4.40e-01 100.0% 29.3%
4000262 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.70 51.0 4.92e-01 97.5% 67.8%
3638842 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.70 63.0 5.21e-01 100.0% 58.5%
3257573 633.6.1.2 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.69 59.0 4.59e-01 100.0% 43.5%
4025710 3871.1.1.0 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.69 50.0 4.33e-01 98.7% 48.8%
3923563 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 56.0 4.63e-01 100.0% 49.7%
3251205 109.4.1.1411 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303 0.67 52.0 3.90e-01 81.0% 39.4%
3595063 192.8.1.343 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C 0.67 42.0 4.52e-01 97.5% 76.9%
3193740 3924.1.1.1 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.67 52.0 3.34e-01 93.7% 17.9%
4154386 5086.1.1.193 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Cytadherence_Hmw2 0.66 61.0 4.61e-01 100.0% 45.1%
3369451 192.2.1.35 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Hobbit 0.66 61.0 5.25e-01 100.0% 75.0%
3610933 150.1.1.96 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PEX11 0.66 58.0 4.08e-01 100.0% 32.6%
3601090 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 55.0 4.10e-01 100.0% 36.5%
3203789 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.65 53.0 3.91e-01 100.0% 32.4%
1956188 3615.1.1.1 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Fzo_mitofusin 0.64 42.0 4.34e-01 96.2% 72.6%
3788006 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 3.17e-01 88.6% 15.2%
3191895 601.16.1.10 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF7784 0.63 56.0 4.12e-01 97.5% 49.0%
3909017 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.63 50.0 4.82e-01 100.0% 76.7%
3625044 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 55.0 4.95e-01 100.0% 71.4%
3729874 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.63 57.0 4.39e-01 100.0% 47.6%
4973175 159.1.2.33 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dUTPase_2 0.62 43.0 3.79e-01 93.7% 49.6%
4145392 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 49.0 3.57e-01 89.9% 31.2%
3691415 2004.1.1.748 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B 0.62 58.0 3.44e-01 100.0% 27.6%
3720093 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.62 55.0 3.94e-01 100.0% 33.9%
3641266 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.62 46.0 4.30e-01 78.5% 64.2%
3606075 3447.1.1.0 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) 0.62 54.0 3.77e-01 100.0% 30.2%
3207999 3660.1.1.4 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › DUF7785 0.62 51.0 4.79e-01 89.9% 73.7%
1885522 3834.1.1.1 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA_TcB_BD 0.61 56.0 3.60e-01 100.0% 23.1%
3511084 3922.1.1.225 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF842 0.61 53.0 4.59e-01 100.0% 61.6%
3305747 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.61 53.0 4.48e-01 100.0% 79.3%
3331225 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.61 42.0 4.46e-01 98.7% 81.4%
3279822 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.61 41.0 3.56e-01 92.4% 45.8%
3962381 150.5.1.50 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › EspA_EspE 0.59 47.0 4.70e-01 100.0% 87.5%
4368947 141.1.1.6 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.59 44.0 3.19e-01 82.3% 86.8%
4019924 601.39.1.5 alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 › DUF7784 0.59 53.0 3.90e-01 100.0% 79.5%
3701413 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 52.0 3.95e-01 100.0% 43.2%
3539186 3187.1.1.0 alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein 0.58 51.0 3.42e-01 100.0% 26.1%
1919334 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.57 46.0 3.99e-01 100.0% 56.6%
3601239 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.56 48.0 3.42e-01 92.4% 94.2%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 49.0 3.30e-01 100.0% 26.0%
3858699 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 42.0 3.83e-01 81.0% 82.0%
3294780 3755.3.1.375 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 0.54 46.0 3.70e-01 96.2% 48.7%
4843090 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.54 45.0 3.98e-01 98.7% 63.4%
3253313 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 48.0 3.53e-01 100.0% 66.7%
3676029 4958.1.1.1 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.51 42.0 2.98e-01 92.4% 27.5%