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BK061588.1__DBA08786.1__X__00047

Bact-Vir

BK061588.1__DBA08786.1__X__00047

Identity

Accession:
BK061588 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-38
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.77 66.0 6.05e-01 100.0% 82.0%
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.74 57.0 3.55e-01 100.0% 14.5%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 51.0 4.93e-01 89.2% 68.9%
3memA01 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.69 54.0 3.81e-01 100.0% 27.5%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 53.0 4.44e-01 100.0% 94.9%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 56.0 4.55e-01 100.0% 94.9%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.68 51.0 3.10e-01 91.9% 26.6%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 54.0 4.06e-01 100.0% 35.8%
2e1qC04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.66 56.0 3.86e-01 100.0% 28.5%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 48.0 2.90e-01 86.5% 93.0%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 55.0 3.84e-01 100.0% 29.8%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 3.94e-01 100.0% 40.0%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 57.0 4.88e-01 100.0% 86.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 53.0 4.45e-01 100.0% 97.1%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 3.57e-01 100.0% 34.2%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.63 48.0 4.19e-01 100.0% 53.5%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 51.0 4.62e-01 100.0% 85.5%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 46.0 3.37e-01 100.0% 28.1%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 3.86e-01 100.0% 62.7%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 3.77e-01 94.6% 68.9%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 3.78e-01 100.0% 67.3%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 3.47e-01 100.0% 30.8%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 43.0 3.41e-01 97.3% 33.7%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 46.0 3.22e-01 100.0% 23.9%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.55e-01 100.0% 41.3%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.60 46.0 3.32e-01 100.0% 70.6%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.60 42.0 2.72e-01 81.1% 26.5%
3mz1B02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 47.0 3.60e-01 100.0% 71.4%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.59 45.0 3.02e-01 100.0% 20.6%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 45.0 3.52e-01 100.0% 37.1%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.25e-01 100.0% 29.9%
2fi9A00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.58 45.0 3.33e-01 97.3% 85.6%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 46.0 3.82e-01 97.3% 97.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.57 47.0 4.64e-01 100.0% 95.0%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 42.0 2.48e-01 86.5% 91.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 42.0 3.46e-01 100.0% 48.9%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 46.0 3.24e-01 100.0% 95.5%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.37e-01 97.3% 51.0%
3c6mC01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.55 40.0 4.01e-01 97.3% 88.6%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.55 42.0 3.28e-01 100.0% 54.1%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.49e-01 100.0% 47.1%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 37.0 2.95e-01 83.8% 97.0%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 38.0 2.46e-01 89.2% 43.5%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.53 42.0 2.74e-01 100.0% 85.4%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 39.0 2.68e-01 100.0% 28.6%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 39.0 2.70e-01 100.0% 56.8%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.52 44.0 4.38e-01 94.6% 94.7%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.52 37.0 2.81e-01 97.3% 26.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.05e-01 97.3% 47.1%
2b5vA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 43.0 2.70e-01 97.3% 26.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931929 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.79 64.0 4.87e-01 100.0% 38.9%
4991814 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.78 66.0 4.49e-01 100.0% 27.9%
3969250 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.77 66.0 4.39e-01 100.0% 26.0%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.77 61.0 5.78e-01 100.0% 78.0%
3970696 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.76 59.0 4.27e-01 100.0% 30.1%
3218303 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.75 60.0 5.72e-01 100.0% 75.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.73 59.0 5.69e-01 100.0% 84.4%
5007155 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.72 59.0 5.67e-01 100.0% 84.4%
3491652 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.72 58.0 4.64e-01 100.0% 44.7%
3407580 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.72 58.0 4.80e-01 100.0% 50.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 55.0 4.99e-01 100.0% 78.3%
3288892 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.70 56.0 5.39e-01 100.0% 86.7%
3473808 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.65 50.0 2.91e-01 89.2% 46.3%
3517011 7590.1.1.6 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid 0.65 47.0 3.15e-01 100.0% 18.8%
4543548 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.64 53.0 3.82e-01 97.3% 65.2%
5031225 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 47.0 3.55e-01 94.6% 35.0%
4410550 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.63 52.0 4.82e-01 100.0% 78.0%
4461643 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.63 51.0 4.53e-01 100.0% 65.0%
3233546 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 3.42e-01 100.0% 45.7%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.62 51.0 3.29e-01 100.0% 19.5%
3220610 221.1.1.202 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF30122 0.62 49.0 3.86e-01 100.0% 91.6%
3489127 10.32.1.88 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N2 0.62 52.0 3.29e-01 100.0% 27.8%
4989479 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.62 51.0 3.77e-01 100.0% 65.5%
3512692 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 49.0 3.95e-01 100.0% 78.8%
3809848 10.32.1.199 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.61 49.0 3.31e-01 100.0% 50.6%
3933289 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 46.0 4.47e-01 100.0% 73.3%
3462014 221.1.1.159 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.61 47.0 3.78e-01 100.0% 85.3%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 47.0 4.21e-01 100.0% 61.5%
3343923 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.61 46.0 2.83e-01 100.0% 28.0%
3481669 284.1.1.5 a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.60 49.0 3.49e-01 100.0% 93.8%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 43.0 3.21e-01 91.9% 26.7%
5002607 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 47.0 3.79e-01 97.3% 95.3%
3587556 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 44.0 3.91e-01 97.3% 81.4%
4964955 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.59 42.0 3.17e-01 91.9% 27.9%
4947000 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.59 48.0 2.96e-01 100.0% 15.9%
3395603 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 48.0 3.55e-01 100.0% 72.7%
4484810 11.1.1.129 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.57 45.0 3.29e-01 100.0% 31.9%
3775907 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.57 46.0 2.96e-01 100.0% 67.1%
3624854 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.57 45.0 3.45e-01 100.0% 36.8%
4458441 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 44.0 3.11e-01 100.0% 36.1%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 44.0 2.85e-01 100.0% 30.2%
3598956 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 40.0 3.44e-01 100.0% 43.8%
5083734 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.27e-01 97.3% 79.0%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.20e-01 91.9% 31.8%
None 0.54 45.0 3.44e-01 100.0% 58.9%
3839318 857.1.1.0 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.54 41.0 3.58e-01 97.3% 52.3%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 3.06e-01 100.0% 42.5%
4216350 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.52 43.0 2.93e-01 100.0% 24.4%
3875797 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 42.0 3.12e-01 100.0% 55.7%
5055761 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 37.0 2.70e-01 86.5% 72.1%
2141750 11.1.1.33 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.52 39.0 3.02e-01 100.0% 50.4%
3874516 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 43.0 2.51e-01 100.0% 16.8%
5043356 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.23e-01 100.0% 43.2%
3980174 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.51 36.0 2.38e-01 78.4% 16.3%
5004620 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 4.06e-01 97.3% 90.0%