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BK061589.1__DBA08843.1__X__00017

Bact-Vir

BK061589.1__DBA08843.1__X__00017

Identity

Accession:
BK061589 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-129
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 43.0 4.81e-01 100.0% 67.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 43.0 4.71e-01 100.0% 66.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 42.0 4.70e-01 100.0% 68.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 40.0 4.35e-01 100.0% 63.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 4.32e-01 100.0% 65.2%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.66 35.0 4.36e-01 100.0% 85.4%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.65 60.0 4.57e-01 100.0% 47.1%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.65 56.0 5.18e-01 96.2% 74.5%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.65 58.0 5.28e-01 100.0% 76.9%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.64 59.0 5.52e-01 100.0% 90.5%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 45.0 4.46e-01 73.1% 100.0%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.64 34.0 4.11e-01 100.0% 80.4%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 5.07e-01 100.0% 80.9%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 55.0 5.04e-01 100.0% 74.5%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 55.0 4.27e-01 100.0% 45.8%
1agjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 54.0 4.85e-01 100.0% 69.4%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.61 55.0 4.07e-01 98.7% 41.0%
1vwxB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 54.0 4.14e-01 100.0% 66.7%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.36e-01 100.0% 56.5%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.60 34.0 4.15e-01 71.8% 91.5%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.60 53.0 4.08e-01 100.0% 44.0%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 4.06e-01 92.3% 84.5%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 4.26e-01 97.4% 57.0%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 47.0 4.07e-01 88.5% 94.4%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.59 49.0 4.22e-01 92.3% 91.9%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.25e-01 97.4% 68.4%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 48.0 4.24e-01 91.0% 89.8%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.58 48.0 4.18e-01 92.3% 91.9%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.58 50.0 4.05e-01 100.0% 73.1%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 50.0 4.37e-01 97.4% 63.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.58 49.0 4.04e-01 100.0% 67.3%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.27e-01 97.4% 69.0%
2yg3A02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.57 45.0 3.64e-01 88.5% 46.3%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 49.0 4.72e-01 97.4% 84.8%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.37e-01 97.4% 77.9%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.57 50.0 4.10e-01 100.0% 75.7%
6fu4A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 47.0 3.71e-01 92.3% 79.1%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.16e-01 97.4% 63.6%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 33.0 2.85e-01 96.2% 36.0%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 4.43e-01 97.4% 77.7%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 4.39e-01 100.0% 81.9%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 48.0 4.47e-01 100.0% 77.8%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 49.0 4.21e-01 100.0% 64.0%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 4.44e-01 98.7% 81.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 30.0 3.14e-01 100.0% 57.1%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 4.06e-01 93.6% 70.4%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 44.0 3.49e-01 96.2% 63.5%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.53 38.0 3.52e-01 76.9% 69.2%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.74e-01 89.7% 67.4%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 47.0 4.15e-01 100.0% 79.1%
2pb7A01 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.52 46.0 3.56e-01 100.0% 68.9%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 42.0 3.40e-01 96.2% 64.0%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.29e-01 88.5% 89.3%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 42.0 3.38e-01 97.4% 64.6%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.68e-01 97.4% 59.8%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.02e-01 100.0% 75.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963049 4.1.1.486 beta barrels › SH3 › SH3 › SH3 › DUF7098 0.79 49.0 4.95e-01 70.5% 62.5%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 43.0 4.70e-01 100.0% 66.2%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 43.0 4.66e-01 100.0% 66.2%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 42.0 4.63e-01 100.0% 66.2%
4419948 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 42.0 4.62e-01 100.0% 67.7%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.72 63.0 5.73e-01 100.0% 71.4%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 59.0 5.35e-01 100.0% 66.7%
4278681 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.71 47.0 4.61e-01 74.4% 62.4%
2138090 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 40.0 4.33e-01 100.0% 66.2%
4003172 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.69 53.0 3.95e-01 100.0% 33.3%
3744064 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.68 52.0 5.00e-01 100.0% 71.1%
5022644 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 54.0 5.07e-01 100.0% 70.5%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.68 53.0 5.05e-01 100.0% 72.2%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.68 61.0 5.81e-01 98.7% 86.7%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 55.0 5.62e-01 98.7% 92.0%
3943285 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 61.0 5.45e-01 100.0% 77.1%
3789214 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.67 58.0 5.26e-01 100.0% 71.4%
4031786 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.67 56.0 5.52e-01 97.4% 85.9%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 60.0 5.35e-01 100.0% 83.6%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.66 57.0 5.45e-01 100.0% 81.5%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.66 59.0 5.24e-01 100.0% 69.1%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 59.0 5.17e-01 100.0% 80.9%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.65 59.0 5.31e-01 100.0% 99.0%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 53.0 5.06e-01 100.0% 76.7%
3943689 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 58.0 5.17e-01 100.0% 82.7%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 57.0 5.18e-01 100.0% 84.8%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 57.0 5.55e-01 98.7% 90.6%
4259247 1.11.1.1 beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.63 54.0 5.06e-01 100.0% 76.8%
5070341 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.63 44.0 3.81e-01 74.4% 96.8%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 57.0 5.61e-01 100.0% 91.8%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 48.0 5.08e-01 94.9% 100.0%
5057694 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 50.0 4.65e-01 100.0% 69.0%
5059104 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.54e-01 100.0% 65.7%
5043359 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 44.0 4.62e-01 74.4% 98.6%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 54.0 5.27e-01 100.0% 89.4%
4957568 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 56.0 5.50e-01 100.0% 94.1%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.61 55.0 5.28e-01 98.7% 87.8%
4030042 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.61 43.0 3.68e-01 74.4% 94.0%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.42e-01 97.4% 68.4%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 53.0 4.84e-01 98.7% 86.7%
5045586 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.59 48.0 3.82e-01 91.0% 64.2%
4366786 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 48.0 4.34e-01 100.0% 64.5%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 52.0 4.48e-01 100.0% 90.4%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.57 50.0 4.86e-01 98.7% 98.8%
5041150 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.57 46.0 4.83e-01 100.0% 98.6%
3968336 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 2.91e-01 83.3% 30.3%
3492373 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 41.0 3.67e-01 79.5% 97.4%
3277088 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.94e-01 97.4% 100.0%
5022325 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.55 46.0 4.29e-01 97.4% 72.0%
3250648 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 46.0 4.29e-01 100.0% 73.0%
5054413 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.55 40.0 3.72e-01 79.5% 97.1%
3286862 319.3.1.2 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN-like 0.54 48.0 4.05e-01 100.0% 97.8%
4957501 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.11e-01 98.7% 75.0%
3268937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.93e-01 100.0% 66.7%
4958890 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.53 38.0 3.79e-01 82.1% 73.8%
5053692 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 46.0 3.55e-01 98.7% 68.3%
3428351 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 41.0 3.08e-01 85.9% 41.5%
4254454 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 40.0 2.85e-01 85.9% 36.9%
5063453 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.51 42.0 3.07e-01 93.6% 53.5%
5058386 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 41.0 3.11e-01 87.2% 52.1%
3269002 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.98e-01 100.0% 71.4%
4077036 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.51 41.0 2.99e-01 89.7% 33.8%
3253616 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.50 44.0 3.41e-01 100.0% 64.3%